Proffil personol
Diddordebau ymchwil
I am interested in analysing large biological data sets from a variety of organisms, including plants, animals, parasites and microbes. Some recent and current projects include the sequencing of the tsetse fly and biomphalaria genomes, snake venom transcriptome analyses, methylation in flatworms, microRNAs, whole genome comparisons (of sheep and schistosomes), metagenomics of limpet guts and cryoconite, red clover transcriptomics, and the identification of neuropeptide receptors and functions in arthropods.
My other interests include the development of infrastructure and new software methodolgy for the handling and analysis of large data sets in bioinformatics. This involves high performance computing, technologies for data integration and data mining, and the development of new algorithms to analyse high-throughput sequencing data sets.
Dysgu
An introduction to Linux and Bioinformatics for PGM1520; Study and Communication Skills, BR12410; Molecular Laboratory Skills, BR12210; Research Methods, Dissertation, and a few lectures to other modules.
Arbenigedd sy’n gysylltiedig â NDC y CU
Yn 2015, cytunodd gwladwriaethau sy’n aelodau'r Cenhedloedd Unedig ar 17 o Nodau Datblygu Cynaliadwy (NDC) byd-eang i ddod â thlodi i ben, diogelu’r blaned a sicrhau ffyniant i bawb. Mae gwaith y person hwn yn cyfrannu at y NDC canlynol:
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NDC 2 Dim Newyn
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NDC 3 Iechyd a Llesiant Da
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NDC 6 Dŵr Glân a Glanweithdra
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NDC 14 Bywyd o Dan y Dŵr
Ôl bys
- 1 Proffiliau Tebyg
Cydweithrediadau a’r prif feysydd ymchwil yn ystod y pum mlynedd ddiwethaf
Proffiliau
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Jack Morgan Book
Unigolyn: Meistr mewn Athroniaeth, Doethur mewn Athroniaeth
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Jack Crosby
Unigolyn: Doethur mewn Athroniaeth
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Deborah Blessing Oladele
Unigolyn: Doethur mewn Athroniaeth
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Harry Pollitt
Unigolyn: Doethur mewn Athroniaeth
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Emily Radford
Unigolyn: Doethur mewn Athroniaeth
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Use of a cytochrome P450 humanized mouse model to refine schistosomiasis drug discovery
Davey, S. D., Forde-Thomas, J. E., Hulme, B. J., Lees, K., Costain, A. H., Evans, M., Rinaldi, G., Frame, L., Stojanovski, L., Simeons, F. R. C., Tavendale, A., MacLeod, A. K., Pichon, R., Lee, Y.-H., Polak, O., Chalmers, I. W., Dankwa, B., Odhiambo, B. K., Guimaraes, V. H. & Hegarty, M. & 8 eraill, , 14 Ebr 2026, Yn: Proceedings of the National Academy of Sciences of the United States of America. 123, 15, 12 t., e2600197123.Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
Mynediad agoredFfeil -
A review of recent Cryptosporidium hominis and Cryptosporidium parvum gp60 subtypes
Oladele, D. B., Swain, M., Robinson, G., Clare, A. & Chalmers, R. M., 21 Gorff 2025, Yn: Current Research in Parasitology and Vector-Borne Diseases. 8, 13 t., 100292.Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl Adolygu › adolygiad gan gymheiriaid
Mynediad agoredFfeil5 Dyfyniadau (Scopus)14 Wedi eu Llwytho i Lawr (Pure) -
Investigating within-host population diversity of Cryptosporidium parvum using BlooMine
Morris, A. V., Connor, T., Pachebat, J. & Swain, M., 20 Tach 2025, Yn: BMC Genomics. 26, 1, 14 t., 1067.Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
Mynediad agoredFfeil1 Wedi eu Llwytho i Lawr (Pure) -
The RNA cargo of Myxococcus outer membrane vesicles
Swain, M. T., Radford, E. J., Akanyeti, A. S., Hallwood, J. H. & Whitworth, D. E., 19 Chwef 2024, Yn: Molecular Omics. 20, 2, t. 138-145 8 t.Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
Mynediad agoredFfeil4 Dyfyniadau (Scopus)21 Wedi eu Llwytho i Lawr (Pure) -
Towards Ceramics Inspired Physiotherapy for Recovering Stroke Patients
Hajzer, S. P., Jones, A., Jones, D., Miles, H., Ellis, V., Villagra Povina, F., Sganga, M., Swain, M. & Bennett-Gillison, S., 14 Medi 2023, Computer Graphics and Visual Computing. EurographicsAllbwn ymchwil: Pennod mewn Llyfr/Adroddiad/Trafodion Cynhadledd › Trafodion Cynhadledd (ISBN)
Mynediad agored -
An eco‐epidemiological modeling approach to investigate dilution effect in two different tick‐borne pathosystems
Occhibove, F., Kenobi, K., Swain, M. & Risley, C., 01 Ebr 2022, Yn: Ecological Applications. 32, 3, 24 t., e2550.Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
Mynediad agoredFfeil18 Dyfyniadau (Scopus)143 Wedi eu Llwytho i Lawr (Pure) -
Complimentary protein extraction methods increase the identification of the Park Grass Experiment metaproteome
Quinn, G. A., Abdelhameed, A., Banat, I. M., Berrar, D., Doerr, S. H., Dudley, E., Francis, L. W., Gazze, S. A., Hallin, I., Matthews, G. P., Swain, M. T., Whalley, W. R. & van Keulen, G., 31 Mai 2022, Yn: Applied Soil Ecology. 173, 5 t., 104388.Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
Mynediad agoredFfeil3 Dyfyniadau (Scopus)92 Wedi eu Llwytho i Lawr (Pure) -
In silico characterisation of the complete Ly6 protein family in Fasciola gigantica supported through transcriptomics of the newly-excysted juveniles
Davey, S. D., Chalmers, I. W., Fernandez-Fuentes, N., Swain, M. T., Smith, D., Abbas Abidi, S. M., Saifullah, M. K., Raman, M., Ravikumar, G., McVeigh, P., Maule, A. G., Brophy, P. M. & Morphew, R. M., 17 Ion 2022, Yn: Molecular Omics. 18, 1, t. 45-56 12 t.Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
Mynediad agoredFfeil8 Dyfyniadau (Scopus)105 Wedi eu Llwytho i Lawr (Pure) -
Interpreting alignment-free sequence comparison: What makes a score a good score?
Swain, M. T. & Vickers, M., 05 Medi 2022, Yn: NAR Genomics and Bioinformatics. 4, 3, 22 t., lqac062.Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
Mynediad agoredFfeil7 Dyfyniadau (Scopus)26 Wedi eu Llwytho i Lawr (Pure) -
Evidence of Immune Modulators in the Secretome of the Equine Tapeworm Anoplocephala perfoliata
Wititkornkul, B., Hulme, B. J., Tomes, J. J., Allen, N. R., Davis, C. N., Davey, S. D., Cookson, A. R., Phillips, H. C., Hegarty, M. J., Swain, M. T., Brophy, P. M., Wonfor, R. E. & Morphew, R. M., 20 Gorff 2021, Yn: Pathogens. 10, 7, 30 t., e912.Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
Mynediad agoredFfeil13 Dyfyniadau (Scopus)230 Wedi eu Llwytho i Lawr (Pure) -
Genotyping and Whole-Genome Resequencing of Welsh Sheep Breeds Reveal Candidate Genes and Variants for Adaptation to Local Environment and Socioeconomic Traits
Sweet-Jones, J., Lenis, V. P., Yurchenko, A. A., Yudin, N. S., Swain, M. & Larkin, D. M., 18 Meh 2021, Yn: Frontiers in Genetics. 12, 13 t., 612492.Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
Mynediad agoredFfeil16 Dyfyniadau (Scopus)119 Wedi eu Llwytho i Lawr (Pure)
Setiau Data Ymchwil
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Interpreting alignment free sequence comparison: what makes a score a good score
Swain, M., Prifysgol Aberystwyth | Aberystwyth University, 01 Chwef 2022
Dangosydd eitem ddigidol (DOI): 10.20391/3e9573af-363b-4ff7-9f27-72eb84440b68
Set ddata
Ffeil -
Microbial genome sequences and taxonomic information based on the Genometa 2012 data set
Swain, M., Prifysgol Aberystwyth | Aberystwyth University, 18 Gorff 2019
Dangosydd eitem ddigidol (DOI): 10.20391/e6974906-f30f-4976-90fb-ea1679eedef0
Set ddata
Ffeil -
Evolutionary genomics of anthroponosis in Cryptosporidium
Swain, M., Pachebat, J. A., Robinson, G. & Chalmers, R. M., Prifysgol Aberystwyth | Aberystwyth University, 26 Medi 2018
Dangosydd eitem ddigidol (DOI): 10.20391/8f137d06-4827-4829-ae7b-fac592d57942
Set ddata
Ffeil
Prosiectau
- 7 Wedi Gorffen
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Genomic analysis of Toxoplasma gondii direct from clinical samples using selective genome enrichment.
Swain, M. (Arweinydd y Prosiect) & Nalepa-Grajcar, J. (Cyd‑arweinydd Ymchwil)
09 Hyd 2017 → 08 Hyd 2020
Prosiect: Ymchwil a ariannwyd yn fewnol
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ISPG-National Phenomics Centre see project 12520
Doonan, J. (Arweinydd y Prosiect), Camargo-Rodriguez, A. (Cyd‑arweinydd Ymchwil), Clare, A. (Cyd‑arweinydd Ymchwil), Draper, J. (Cyd‑arweinydd Ymchwil), Howarth, C. (Cyd‑arweinydd Ymchwil), Powell, W. (Cyd‑arweinydd Ymchwil), Swain, M. (Cyd‑arweinydd Ymchwil) & Zwiggelaar, R. (Cyd‑arweinydd Ymchwil)
Biotechnology and Biological Sciences Research Council
01 Ebr 2017 → 31 Maw 2019
Prosiect: Ymchwil a ariannwyd yn allanol
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Improving Cryptosporidium diagnostics and understanding of transmission by mining crypsodium genomes
Swain, M. (Arweinydd y Prosiect) & Morris, A. (Cyd‑arweinydd Ymchwil)
01 Mai 2016 → 30 Ebr 2019
Prosiect: Ymchwil a ariannwyd yn fewnol
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Unravelling the ecdysis cascade in crustaceans: Can we unify neuropeptide and receptor identities and functions in arthropods?
Wilcockson, D. (Arweinydd y Prosiect) & Swain, M. (Cyd‑arweinydd Ymchwil)
Biotechnology and Biological Sciences Research Council
01 Tach 2014 → 31 Hyd 2017
Prosiect: Ymchwil a ariannwyd yn allanol
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Flatworm DNA methylation: deciphering the mark and characterising the machinery
Hoffmann, K. (Arweinydd y Prosiect) & Swain, M. (Cyd‑arweinydd Ymchwil)
Biotechnology and Biological Sciences Research Council
15 Ebr 2013 → 14 Ebr 2016
Prosiect: Ymchwil a ariannwyd yn allanol
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Bioinformatics and genomic and phenomic platform development
Armstead, I. (Arweinydd y Prosiect), Swain, M. (Cyd‑arweinydd Ymchwil), Doonan, J. (Cyd‑arweinydd Ymchwil), Boyle, R. (Cyd‑arweinydd Ymchwil), Hegarty, M. (Cyd‑arweinydd Ymchwil), Thomas, I. (Cyd‑arweinydd Ymchwil), Huang, L. (Cyd‑arweinydd Ymchwil), Fernandez Fuentes, N. (Cyd‑arweinydd Ymchwil), Neal, M. (Cyd‑arweinydd Ymchwil) & Gay, A. (Cyd‑arweinydd Ymchwil)
01 Ebr 2012 → 31 Maw 2017
Prosiect: Ymchwil a ariannwyd yn allanol
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RSB : Rumen Systems Biology
Kingston-Smith, A. (Arweinydd y Prosiect), Swain, M. (Cyd‑arweinydd Ymchwil), Mur, L. (Cyd‑arweinydd Ymchwil), Creevey, C. (Cyd‑arweinydd Ymchwil), Allison, G. (Cyd‑arweinydd Ymchwil), Scollan, N. (Cyd‑arweinydd Ymchwil), Pachebat, J. (Cyd‑arweinydd Ymchwil), Newbold, J. (Cyd‑arweinydd Ymchwil), Morphew, R. (Cyd‑arweinydd Ymchwil), Griffith, G. (Cyd‑arweinydd Ymchwil) & Huws, S. (Cyd‑arweinydd Ymchwil)
Biotechnology and Biological Sciences Research Council
01 Ebr 2012 → 31 Maw 2017
Prosiect: Ymchwil a ariannwyd yn allanol
Gweithgareddau
- 1 Ymweld â sefydliad academaidd allanol
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Queen's University Belfast
Creevey, C. (Ymchwilydd Gwadd) & Swain, M. (Ymchwilydd Gwadd)
2020 → …Gweithgaredd: Ymweld â sefydliad allanol › Ymweld â sefydliad academaidd allanol