Bioinformatics and genomic and phenomic platform development

Canlyniadau chwilio

• 2021

  A deep learning-integrated micro-CT image analysis pipeline for quantifying rice lodging resistance-related traits

  Wu, D., Wu, D., Feng, H., Duan, L., Dai, G., Liu, X., Wang, K., Yang, P., Chen, G., Gay, A. P., Doonan, J. H., Niu, Z., Xiong, L. & Yang, W., 08 Maw 2021, Yn: Plant Communications. 2, 2, 13 t., 100165.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Culms 100%
  • Lodging Resistance 35%
  • Pipelines 28%
  • Learning 21%
  • Image Analysis 21%

  42 Dyfyniadau (Scopus)

  194 Wedi eu Llwytho i Lawr (Pure)

• 2020

  Drought priming effects on alleviating the photosynthetic limitations of wheat cultivars (Triticum aestivum L.) with contrasting tolerance to abiotic stresses

  Mendanha, T., Rosenqvist, E., Nordentoft Hyldgaard, B., Doonan, J. H. & Ottosen, C. O., 27 Tach 2020, Yn: Journal of Agronomy and Crop Science. 206, 6, t. 651-664 14 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Stress 100%
  • Cultivar 85%
  • Drought 85%
  • Wheat 57%
  • Grains 14%

  24 Dyfyniadau (Scopus)

  357 Wedi eu Llwytho i Lawr (Pure)

• Genotypic variations in leaf and whole-plant water use efficiencies are closely related in bread wheat genotypes under well-watered and water-limited conditions during grain filling

  del Pozo, A., Méndez-Espinoza, A. M., Romero-Bravo, S., Garriga, M., Estrada, F., Alcaíno, M., Camargo-Rodriguez, A. V., Corke, F. M. K., Doonan, J. H. & Lobos, G. A., 16 Ion 2020, Yn: Scientific Reports. 10, 1, 460.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Water 100%
  • Condition 84%
  • Assimilation 61%
  • Plant 61%
  • Filling 46%

  33 Dyfyniadau (Scopus)

  171 Wedi eu Llwytho i Lawr (Pure)

• Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

  Gordon, S. P., Contreras-Moreira, B., Levy, J. J., Djamei, A., Czedik-Eysenberg, A., Tartaglio, V. S., Session, A., Martin, J., Cartwright, A., Katz, A., Singan, V. R., Goltsman, E., Barry, K., Dinh-Thi, V. H., Chalhoub, B., Diaz-Perez, A., Sancho, R., Lusinska, J., Wolny, E. & Nibau, C. & 13 eraill, Doonan, J. H., Mur, L. A. J., Plott, C., Jenkins, J., Hazen, S. P., Lee, S. J., Shu, S., Goodstein, D., Rokhsar, D., Schmutz, J., Hasterok, R., Catalan, P. & Vogel, J. P., 29 Gorff 2020, Yn: Nature Communications. 11, 1, 16 t., 3670.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Polyploid 100%
  • Brachypodium 33%
  • Evolution 33%
  • Genome Evolution 33%
  • Founder Effect 16%

  80 Dyfyniadau (Scopus)

  319 Wedi eu Llwytho i Lawr (Pure)

• High-Throughput Genome-Wide Genotyping To Optimize the Use of Natural Genetic Resources in the Grassland Species Perennial Ryegrass (Lolium perenne L.)

  Keep, T., Sampoux, J. P., Blanco-Pastor, J. L., Dehmer, K. J., Hegarty, M. J., Ledauphin, T., Litrico, I., Muylle, H., Roldán-Ruiz, I., Roschanski, A. M., Ruttink, T., Surault, F., Willner, E. & Barre, P., 01 Medi 2020, Yn: G3 (Bethesda, Md.). 10, 9, t. 3347-3364 18 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Genetic Resource 100%
  • Lolium perenne 75%
  • Genotyping 50%
  • Ecotype 50%
  • Information 50%

  30 Dyfyniadau (Scopus)

  163 Wedi eu Llwytho i Lawr (Pure)

• Semi-Automated Field Plot Segmentation From UAS Imagery for Experimental Agriculture

  Robb, C., Hardy, A., Doonan, J. H. & Brook, J., 09 Rhag 2020, Yn: Frontiers in Plant Science. 11, 13 t., 591886.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Imagery 100%
  • Segmentation 83%
  • State 33%
  • Monitoring 33%
  • Cost 33%

  24 Dyfyniadau (Scopus)

  211 Wedi eu Llwytho i Lawr (Pure)

• 2019

  A comparative assessment of the performance of a stay-green sorghum (Sorghum bicolor (L) Moench) introgression line developed by marker-assisted selection and its parental lines

  Galyuon, I. K., Gay, A., Hash, C. T., Bidinger, F. R. & Howarth, C., 26 Meh 2019, Yn: African Journal of Biotechnology. 18, 26, t. 548-563 16 t., 7118D0361330.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Water 100%
  • Anthesis 42%
  • Leaf Area 28%
  • Introgression 28%
  • Photosystem II 28%

  308 Wedi eu Llwytho i Lawr (Pure)

• Differential gene expression and gene ontologies associated with increasing water-stress in leaf and root transcriptomes of perennial ryegrass (Lolium perenne)

  Fradera-Sola, A., Thomas, A., Gasior, D., Harper, J., Hegarty, M., Armstead, I. & Fernandez Fuentes, N., 30 Gorff 2019, Yn: PLoS ONE. 14, 7, e0220518.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Genes 100%
  • Lolium perenne 85%
  • Water 57%
  • Roots 57%
  • Transcriptome 42%

  8 Dyfyniadau (Scopus)

  213 Wedi eu Llwytho i Lawr (Pure)

• Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species

  Maughan, P. J., Lee, R., Walstead, R., Vickerstaff, R. J., Fogarty, M. C., Brouwer, C. R., Reid, R. R., Jay, J. J., Bekele, W. A., Jackson, E. W., Tinker, N. A., Langdon, T., Schlueter, J. A. & Jellen, E. N., 22 Tach 2019, Yn: BMC Biology. 17, 1, 92.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Oat 100%
  • Species 100%
  • Avena 50%
  • Chromosomes 50%
  • Chromosome 50%

  63 Dyfyniadau (Scopus)

  198 Wedi eu Llwytho i Lawr (Pure)

• Integrating a newly developed BAC-based physical mapping resource for Lolium perenne with a genome-wide association study across a L. Perenne European ecotype collection identifies genomic contexts associated with agriculturally important traits

  Harper, J., de Vega, J., Swain, S., Heavens, D., Gasior, D., Thomas, A., Evans, C., Lovatt, A., Lister, S., Thorogood, D., Skot, L., Hegarty, M., Blackmore, T., Kudrna, D., Byrne, S., Asp, T., Powell, W., Fernandez-Fuentes, N. & Armstead, I., 08 Mai 2019, Yn: Annals of Botany. 123, 6, t. 977-992 16 t., mcy230.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Lolium perenne 100%
  • Genomics 100%
  • Lolium 100%
  • Bacterial Artificial Chromosome 100%
  • Ecotype 100%

  7 Dyfyniadau (Scopus)

  209 Wedi eu Llwytho i Lawr (Pure)

• Physiological and biochemical basis for stay-green trait in sorghum

  Galyuon, I. K. A., Gay, A., Borrell, A. K. & Howarth, C. J., 2019, Yn: African Crop Science Journal. 27, 4, t. 653, 677

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  170 Wedi eu Llwytho i Lawr (Pure)

• Rapid UHPLC-MS metabolite profiling and phenotypic assays reveal genotypic impacts of nitrogen supplementation in oats

  Allwood, J. W., Xu, Y., Martinez-Martin, P., Palau, R., Cowan, S., Goodacre, R., Marshall, A., Stewart, D. & Howarth, C., 12 Maw 2019, Yn: Metabolomics. 15, 3, 42.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Oat 100%
  • Cereal 100%
  • Metabolite 45%
  • Sample 27%
  • Health 27%

  19 Dyfyniadau (Scopus)

  330 Wedi eu Llwytho i Lawr (Pure)

• Water-Saving Traits Can Protect Wheat Grain Number Under Progressive Soil Drying at the Meiotic Stage: A Phenotyping Approach

  Faralli, M., Williams, K., Han, J., Corke, F., Doonan, J. & Kettlewell, P. S., 01 Rhag 2019, Yn: Journal of Plant Growth Regulation. 38, 4, t. 1562-1573 12 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Grains 100%
  • Water Utilization 66%
  • Wheat 44%
  • Meiosis 33%
  • Soil 33%

  24 Dyfyniadau (Scopus)

  170 Wedi eu Llwytho i Lawr (Pure)

• 2018

  Haplotype based genotyping-by-sequencing in oat genome research

  Bekele, W. A., Wight, C. P., Chao, S., Howarth, C. & Tinker, N. A., 25 Maw 2018, Yn: Plant Biotechnology Journal. 16, 8, t. 1452-1463 12 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Haplotype 100%
  • Genomic Selection 40%
  • Single Nucleotide Polymorphism 40%
  • Association 30%
  • Accuracy 20%

  103 Dyfyniadau (Scopus)

  296 Wedi eu Llwytho i Lawr (Pure)

• Identification of Stipules reduced, a leaf morphology gene in pea (Pisum sativum)

  Moreau, C., Hofer, J. M., Eléouët, M., Sinjushin, A., Ambrose, M., Skøt, K., Blackmore, T., Swain, M., Hegarty, M., Balanza, V., Ferrándiz, C. & Ellis, T. H. N., 01 Hyd 2018, Yn: New Phytologist. 220, 1, t. 288-299 12 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Pea 100%
  • Stipule 42%
  • Genes 28%
  • Leaves 28%
  • Gene 28%

  31 Dyfyniadau (Scopus)

  227 Wedi eu Llwytho i Lawr (Pure)

• Mapping of easy to screen SSR markers for selection of RFLP markers-bracketed downy mildew resistance QTLs in pearl millet

  Taunk, J., Sehgal, D., Yadav, N., Howarth, C., Yadav, R. & Yadav, R., 01 Meh 2018, Yn: European Journal of Plant Pathology. 151, 2, t. 401-411 11 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Downy Mildew 100%
  • Restriction Fragment Length Polymorphism 100%

  7 Dyfyniadau (Scopus)

  214 Wedi eu Llwytho i Lawr (Pure)

• 2017

  Assembly and annotation of a physical map-based draft genome of the forage grass Lolium perenne (P0920)

  Beynon, S., 14 Ion 2017.

  Allbwn ymchwil: Cyfraniad at gynhadledd › Poster

  • Lolium perenne 100%
  • Perennial Ryegrass 100%
  • Genes 33%
  • Forage Grasses 33%
  • Genotype 33%

• Deep sequencing of Suppression Subtractive Hybridisation drought and recovery libraries of the non-model crop Trifolium repens L.

  Bisaga, M., Lowe, M., Hegarty, M., Abberton, M. & Ravagnani, A., 23 Chwef 2017, Yn: Frontiers in Plant Science. 8, 213.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Libraries 100%
  • Trifolium repens 80%
  • Drought 80%
  • White Clover 80%
  • Deep Sequencing 40%

  7 Dyfyniadau (Scopus)

  217 Wedi eu Llwytho i Lawr (Pure)

• Editorial: Plant Phenotyping and Phenomics for Plant Breeding

  Lobos, G. A., Camargo-Rodriguez, A., del Pozo, A., Araus, J. L., Ortiz, R. & Doonan, J., 22 Rhag 2017, Yn: Frontiers in Plant Science. 8, 2181.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl olygyddol › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  69 Dyfyniadau (Scopus)

  191 Wedi eu Llwytho i Lawr (Pure)

• Expression of a fungal ferulic acid esterase in suspension cultures of tall fescue (Festuca arundinacea) decreases cell wall feruloylation and increases rates of cell wall digestion

  Morris, P., Dalton, S., Langdon, T., Hauck, B. & Buanafina, M. M. D. O., 01 Mai 2017, Yn: Plant Cell, Tissue and Organ Culture. 129, 2, t. 181-193 13 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Ferulic Acid 100%
  • Tall Fescue 60%
  • Festuca arundinacea 60%
  • Arabinoxylan 40%
  • Promoter Region 40%

  7 Dyfyniadau (Scopus)

  208 Wedi eu Llwytho i Lawr (Pure)

• iFrag: A Protein-Protein Interface Prediction Server Based on Sequence Fragments

  Garcia-Garcia, J., Valls-Comamala, V., Guney, E., Andreu, D., Muñoz , F. J., Fernandez-Fuentes, N. & Oliva, B., 03 Chwef 2017, Yn: Journal of Molecular Biology. 429, 3, t. 382-389 8 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Primary Structure 100%
  • Peptide 25%
  • Interface Potential 25%
  • Surface 25%
  • Aggregation 25%

  37 Dyfyniadau (Scopus)

  251 Wedi eu Llwytho i Lawr (Pure)

• Linking Auxin with Photosynthetic Rate via Leaf Venation

  Mcadam, S. A. M., Eléouët, M. P., Best, M., Brodribb, T. J., Murphy, M. C., Cook, S. D., Dalmais, M., Dimitriou, T., Gélinas-Marion, A., Gill, W. M., Hegarty, M., Hofer, J. M. I., Maconochie, M., Mcadam, E. L., McGuiness, P., Nichols, D. S., Ross, J. J., Sussmilch, F. C. & Urquhart, S., 30 Medi 2017, Yn: Plant Physiology. 175, 1, t. 351-360 10 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Leaves 100%
  • Auxin 36%
  • Mutants 27%
  • Gas Exchange 18%
  • Pea 18%

  57 Dyfyniadau (Scopus)

  311 Wedi eu Llwytho i Lawr (Pure)

• The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

  Cooper, L., Meier, A., Laporte, M.-A., Elser, J. L., Mungall, C., Sinn, B. T., Cabaliere, D., Carbon, S., Dunn, N. A., Smith, B., Qu, B., Preece, J., Zhang, E., Todorovic, S., Gkoutos, G., Doonan, J., Stevenson, D. W., Arnaud, E. & Jaiswal, P., 23 Tach 2017, Yn: Nucleic Acids Research. gkx1152.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Ontology 100%
  • Plant 58%
  • Phenotype 25%
  • Genetics 25%
  • Species 16%

  149 Dyfyniadau (Scopus)

  230 Wedi eu Llwytho i Lawr (Pure)

• 2016

  Automated estimation of tiller number in wheat by ribbon detection

  Boyle, R. D., Corke, F. M. K. & Doonan, J. H., Gorff 2016, Yn: Machine Vision and Applications. 27, 5, t. 637-646 10 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Wheat 100%
  • Measurement 66%
  • Plant 66%
  • Grains 33%
  • Computers 33%

  14 Dyfyniadau (Scopus)

  369 Wedi eu Llwytho i Lawr (Pure)

• Genetic diversity of stay-green sorghums and their derivatives revealed by microsatellites

  Galyuon, I. K. A. & Howarth, C., 22 Meh 2016, Yn: African Journal of Biotechnology. 15, 25, t. 1363-1374

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Sorghum 100%
  • Allele 75%
  • Breeding 50%
  • Chromosomes 50%
  • Genotype 50%

  194 Wedi eu Llwytho i Lawr (Pure)

• Implementation of genomic prediction in Lolium perenne (L.) breeding populations

  Grinberg, N., Lovatt, A., Hegarty, M., Macfarlane, A. C., Skot, K., Kelly, R., Blackmore, T., Thorogood, D., King, R. D., Armstead, I., Powell, W. & Skot, L., 12 Chwef 2016, Yn: Frontiers in Plant Science. 7, FEB2016, 10 t., 133.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Breeding 100%
  • Lolium perenne 100%
  • Genomics 100%
  • Prediction 100%
  • Perennial Ryegrass 100%

  62 Dyfyniadau (Scopus)

  228 Wedi eu Llwytho i Lawr (Pure)

• Insight into the machinery that oils chromatin dynamics

  Wright, R. H. G., Fernandez-Fuentes, N., Oliva, B. & Beato, M., 28 Tach 2016, Yn: Nucleus. 7, 6, t. 532-539

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  • Chromatin 100%
  • Adenosine Triphosphate 55%
  • Lysozyme 33%
  • Enzymes 33%
  • Nucleosome 22%

  7 Dyfyniadau (Scopus)

• InteractoMIX: A suite of computational tools to exploit interactomes in biological and clinical research

  Poglayen, D., Marín-López, M. A., Bonet, J., Fornes, O., Garcia-Garcia, J., Planas-Iglesias, J., Segura, J., Oliva, B. & Fernandez-Fuentes, N., 09 Meh 2016, Yn: Biochemical Society Transactions. 44, 3, t. 917-924 8 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Interactome 100%
  • Organisms 33%
  • Health 33%
  • Biological Phenomena and Functions Concerning the Entire Organism 33%
  • Exercise 33%

  4 Dyfyniadau (Scopus)

  118 Wedi eu Llwytho i Lawr (Pure)

• MetaPred2CS: A sequence-based meta-predictor for protein-protein interactions of prokaryotic two-component system proteins

  Kara, A., Vickers, M., Swain, M., Whitworth, D. & Fernandez-Fuentes, N., 01 Tach 2016, Yn: Bioinformatics. 32, 21, t. 3339-3341 3 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Proteins 100%
  • Predictor 66%
  • Spider Web 66%
  • Protein-Protein Interaction 33%
  • Orphan 33%

  2 Dyfyniadau (Scopus)

  104 Wedi eu Llwytho i Lawr (Pure)

• Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

  Lensink, M. F., Velankar, S., Kryshtafovych, A., Huang, S.-Y., Schneidman-Duhovny, D., Sali, A., Segura, J., Fernandez-fuentes, N., Viswanath, S., Elber, R., Grudinin, S., Popov, P., Neveu, E., Lee, H., Baek, M., Park, S., Heo, L., Rie Lee, G., Seok, C. & Qin, S. & 30 eraill, Zhou, H.-X., Ritchie, D. W., Maigret, B., Devignes, M.-D., Ghoorah, A., Torchala, M., Chaleil, R. A. G., Bates, P. A., Ben-Zeev, E., Eisenstein, M., Negi, S. S., Weng, Z., Vreven, T., Pierce, B. G., Borrman, T. M., Yu, J., Ochsenbein, F., Guerois, R., Vangone, A., Rodrigues, J. P. G. L. M., Van Zundert, G., Nellen, M., Xue, L., Karaca, E., Melquiond, A. S. J., Visscher, K., Kastritis, P. L., Bonvin, A. M. J. J., Xu, X. & Qiu, L., 20 Medi 2016, Yn: Proteins: Structure, Function and Genetics. 84, S1, t. 323-348

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Experiment 100%
  • Association 50%
  • DNA Template 50%
  • Crystal 25%
  • Protein Data Bank 25%

  134 Dyfyniadau (Scopus)

  279 Wedi eu Llwytho i Lawr (Pure)

• The GH51 α-l-arabinofuranosidase from Paenibacillus sp. THS1 is multifunctional, hydrolyzing main-chain and side-chain glycosidic bonds in heteroxylans.

  Bouraoui, H., Desrousseaux, M.-L., Ioannou, E., Alvira, P., Manaï, M., Rémond,, C., Dumon, C., Fernandez-Fuentes, N. & O'Donohue, M. J., 08 Gorff 2016, Yn: Biotechnology for Biofuels. 9, 140.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Lysozyme 100%
  • Active Site 50%
  • Xylanase 33%
  • Alicyclobacillus 33%
  • pH 33%

  32 Dyfyniadau (Scopus)

  203 Wedi eu Llwytho i Lawr (Pure)

• 2015

  A synteny-based draft genome sequence of the forage grass Lolium perenne

  Byrne, S. L., Nagy, I., Pfeifer, M., Armstead, I., Swain, S., Studer, B., Campbell, J., Czaban, A., Hentrup, S., Panitz, F., Bendixen, C., Hedegaard, J., Caccamo, M., Asp, T. & Mayer, K., 13 Tach 2015, Yn: Plant Journal. 84, 4, t. 816-826 11 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Lolium perenne 100%
  • Forage Grasses 100%
  • Pollen 83%
  • Barley 33%
  • Genes 33%

  154 Dyfyniadau (Scopus)

  198 Wedi eu Llwytho i Lawr (Pure)

• Genetic identification of Kazakhstan Oat varieties

  Nurpeissov, M., Abugaliyeva, A. & Langdon, T., 01 Rhag 2015, Yn: Biosciences Biotechnology Research Asia. 12, 3, t. 2227-2233 7 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  • Varieties 100%
  • Breeding 28%
  • Oat 28%
  • Polymorphism 21%
  • Genetic Relationships 14%

  2 Dyfyniadau (Scopus)

• Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor

  Kara, A., Vickers, M., Swain, M., Whitworth, D. E. & Fernandez-Fuentes, N., 2015, Yn: BMC Bioinformatics. 16, 1, 297.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Predictor 100%
  • Hybrid 25%
  • In Silico 25%
  • Computer Model 25%
  • Benchmark 25%

  2 Dyfyniadau (Scopus)

  177 Wedi eu Llwytho i Lawr (Pure)

• Human IgG1 Responses to Surface Localised Schistosoma mansoni Ly6 Family Members Drop following Praziquantel Treatment

  Chalmers, I. W., Fitzsimmons, C. M., Brown, M., Pierrot, C., Jones, F. M., Wawrzyniak, J. M., Fernandez-Fuentes, N., Tukahebwa, E. M., Dunne, D. W., Khalife, J. & Hoffmann, K. F., Gorff 2015, Yn: PLoS Neglected Tropical Diseases. 9, 7, t. e0003920 e0003920.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Schistosoma Mansoni 100%
  • Surface Property 100%
  • Praziquantel 100%
  • Immunoglobulin G1 100%
  • Schistosoma 33%

  17 Dyfyniadau (Scopus)

  250 Wedi eu Llwytho i Lawr (Pure)

• VORFFIP-Driven Dock: V-D ²OCK, a fast, accurate protein docking strategy

  Segura, J., Marín-López, M. A., Jones, P. F., Oliva, B., Fernandez-fuentes, N. & Keskin, O. (Golygydd), 12 Maw 2015, Yn: PLoS ONE. 10, 3, e0118107.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Protein Complexes 100%
  • Accuracy 20%
  • Comprehension 20%
  • Structure Determination 20%
  • Velocity 20%

  22 Dyfyniadau (Scopus)

  145 Wedi eu Llwytho i Lawr (Pure)

• 2014

  ArchDB 2014: Structural classification of loops in proteins

  Bonet, J., Planas-Iglesias, J., Garcia-Garcia, J., Marín-López, M. A., Fernandez-Fuentes, N. & Oliva, B., 01 Ion 2014, Yn: Nucleic Acids Research. 42, D1, t. D315-D319 5 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Lysozyme 100%
  • Protein Design 100%
  • Protein Dynamics 100%
  • Classification 100%
  • Protein Structure Prediction 100%

  45 Dyfyniadau (Scopus)

  239 Wedi eu Llwytho i Lawr (Pure)

• Challenges of Crop Phenomics in the Post-genomic Era

  Gegas, V. C., Gay, A., Camargo-Rodriguez, A. & Doonan, J., 22 Ion 2014, Phenomics. Hancock, J. (gol.). 1 gol. Boca Raton: Taylor & Francis, t. 142-171 30 t.

  Allbwn ymchwil: Pennod mewn Llyfr/Adroddiad/Trafodion Cynhadledd › Pennod

  • Arabidopsis 100%
  • Brachypodium 100%

• Conformational flexibility of the oncogenic protein LMO2 primes the formation of the multi-protein transcription complex

  Sewell, H., Tanaka, T., Omari, K. E., Mancini, E. J., Cruz, A., Fernandez-Fuentes, N., Chambers, J. & Rabbitts, T. H., 10 Ion 2014, Yn: Scientific Reports. 4, 3643.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • LMO2 100%
  • Crystal Structure 12%
  • Antibody 12%
  • Transcription 12%
  • Protein Function 12%

  16 Dyfyniadau (Scopus)

  157 Wedi eu Llwytho i Lawr (Pure)

• Frag’r’Us: Knowledge-based sampling of protein backbone conformations for de novo structure-based protein design

  Bonet, J., Segura, J., Planas-Iglesias, J., Oliva, B. & Fernandez-Fuentes, N., 01 Gorff 2014, Yn: Bioinformatics. 30, 13, t. 1935-1936

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Conformation 100%
  • Protein Structure 50%
  • Sampling 50%
  • Structural Motif 25%
  • Protein Design 25%

  18 Dyfyniadau (Scopus)

  207 Wedi eu Llwytho i Lawr (Pure)

• Objective Definition of Rosette Shape Variation Using a Combined Computer Vision and Data Mining Approach

  Camargo-Rodriguez, A., Papadopoulou, D., Spyropoulou, Z., Vlachonasios, K., Doonan, J. H., Gay, A. P. & Candela, H. (Golygydd), 07 Mai 2014, Yn: PLoS ONE. 9, 5, t. e96889 11 t., e96889.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Computer Vision 100%
  • Rosette Formation 100%
  • Statistical Analysis 66%
  • Shape Variation 66%
  • Data Analysis 66%

  29 Dyfyniadau (Scopus)

  191 Wedi eu Llwytho i Lawr (Pure)

• 2013

  A modular perspective of protein structures: application to fragment based loop modeling

  Fernandez-Fuentes, N. & Fiser, A., 2013, Protein Supersecondary Structures. Kister, A. E. (gol.). Springer Nature, Cyfrol 932. t. 141-158 18 t. (Methods in Molecular Biology; Cyfrol 932).

  Allbwn ymchwil: Pennod mewn Llyfr/Adroddiad/Trafodion Cynhadledd › Pennod

  • Supersecondary Structure 100%
  • Protein Structure 75%
  • Conformation 50%
  • Saturation 25%
  • Dihedral Angle 25%

  11 Dyfyniadau (Scopus)

• Peptides: minimal drug surrogates to interrogate and interfere with protein function

  Cruz-Migoni, A., Fernandez-Fuentes, N. & Rabbitts, T. H., 01 Medi 2013, Yn: MedChemComm. 4, t. 1218-1221

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Adolygu Llenyddiaeth › adolygiad gan gymheiriaid

  • Peptide 100%
  • Molecule 33%
  • Interactome 33%
  • Targeting Protein 33%
  • Motivation 33%

  5 Dyfyniadau (Scopus)

• Stomatal lock-up following pathogenic challenge: Source or symptom of costs of resistance in crops?

  Mur, L. A. J., Simpson, C., Gay, A., Paveley, N., Sanchez-Martin, J. & Prats, E., Rhag 2013, Yn: Plant Pathology. 62, S1, t. 72-82 11 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  • Infectious Agent 100%
  • Stoma 100%
  • Plant 100%
  • Gene 100%
  • Genes 100%

  12 Dyfyniadau (Scopus)

• The development of chlorophyll-based markers in poultry diets to aid detection of fluorescent fecal contamination

  Lee, M. R. F., Leemans, D., Theobald, V. J., Fleming, H. R. & Gay, A. P., 01 Rhag 2013, Yn: Poultry Science. 92, 12, t. 3251-3258 8 t.

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Chlorophyllin 100%
  • Feces 100%
  • Detection 80%
  • Chlorophyll 40%
  • Poultry 40%

  2 Dyfyniadau (Scopus)

  73 Wedi eu Llwytho i Lawr (Pure)

• Variation in canopy duration in the perennial biofuel crop Miscanthus reveals complex associations with yield: Canopy duration and yield in Miscanthus

  Robson, P. R. H., Farrar, K., Gay, A. P., Jensen, E. F., Clifton-Brown, J. C. & Donnison, I. S., 2013, Yn: Journal of Experimental Biology. 64, 8, t. 2373-2383

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  • Canopy 100%
  • Miscanthus 58%
  • Genotype 33%
  • Energy Crop 25%
  • Perennials 16%

  41 Dyfyniadau (Scopus)

• 2012

  A holistic in silico approach to predict functional sites in protein structures

  Segura, J., Jones, P. F. & Fernandez-Fuentes, N., 15 Gorff 2012, Yn: Bioinformatics. 28, 14, t. 1845-1850

  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

  Mynediad agored

  Ffeil

  • Peptide 100%
  • Cell Function 100%
  • Binding Site 50%
  • Random Forest 50%
  • Energy 50%

  30 Dyfyniadau (Scopus)

  139 Wedi eu Llwytho i Lawr (Pure)