A DNA Barcode for land plants

Peter M Hollingsworth; Laura L. Forrest; John L. Spouge; Mehrdad Hajibabaei; Sujeevan Ratnasingham; Michelle van der Bank; Mark W. Chase; Robyn S. Cowan; David L. Erickson; Aron J. Fazekas; Sean W. Graham; Karen E. James; Ki-Joong Kim; W. John Kress; Harald Schneider; Jonathan van AlphenStahl; Spencer C. H. Barrett; Cassio van den Berg; Diego Bogarin; Kevin S. Burgess; Kenneth M. Cameron; Mark Carine; Juliana Chacon; Alexandra Clark; James J. Clarkson; Ferozah Conrad; Dion  S. Devey; Terry A. J. Hedderson; C. S. Ford; Michelle L. Hollingsworth; Brian C. Husband; Laura J. Kelly; Prasad R. Kesanakurti; Jung Sung Kim; Young-Dong Kim; Renaud Lahaye; Hae-Lim Lee; David G. Long; Santiago Madriñán; Olivier Maurin; Isabelle Meusnier; Steven G. Newmaster; Chong-Wook Park; Diana M. Percy; Gitte Petersen; J. E. Richardson; Gerardo A. Salazar; Vincent Savolainen; Ole Seberg; M. J. Wilkinson; Dong-Keun Yi; Damon P. Little

doi:10.1073/pnas.0905845106

A DNA Barcode for land plants

Peter M Hollingsworth , Laura L. Forrest, John L. Spouge, Mehrdad Hajibabaei, Sujeevan Ratnasingham, Michelle van der Bank, Mark W. Chase, Robyn S. Cowan, David L. Erickson, Aron J. Fazekas, Sean W. Graham, Karen E. James, Ki-Joong Kim, W. John Kress, Harald Schneider, Jonathan van AlphenStahl, Spencer C. H. Barrett, Cassio van den Berg, Diego Bogarin, Kevin S. BurgessKenneth M. Cameron, Mark Carine, Juliana Chacon, Alexandra Clark, James J. Clarkson, Ferozah Conrad, Dion S. Devey, Terry A. J. Hedderson, C. S. Ford, Michelle L. Hollingsworth, Brian C. Husband, Laura J. Kelly, Prasad R. Kesanakurti, Jung Sung Kim, Young-Dong Kim, Renaud Lahaye, Hae-Lim Lee, David G. Long, Santiago Madriñán, Olivier Maurin, Isabelle Meusnier, Steven G. Newmaster, Chong-Wook Park, Diana M. Percy, Gitte Petersen, J. E. Richardson, Gerardo A. Salazar, Vincent Savolainen, Ole Seberg, M. J. Wilkinson, Dong-Keun Yi, Damon P. Little

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

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DNA barcoding involves sequencing a standard region of DNA as a tool for species identification. However, there has been no agreement on which region(s) should be used for barcoding land plants. To provide a community recommendation on a standard plant barcode, we have compared the performance of 7 leading candidate plastid DNA regions (atpF–atpH spacer, matK gene, rbcL gene, rpoB gene, rpoC1 gene, psbK–psbI spacer, and trnH–psbA spacer). Based on assessments of recoverability, sequence quality, and levels of species discrimination, we recommend the 2-locus combination of rbcL+matK as the plant barcode. This core 2-locus barcode will provide a universal framework for the routine use of DNA sequence data to identify specimens and contribute toward the discovery of overlooked species of land plants.

Iaith wreiddiol	Saesneg
Tudalennau (o-i)	12794-12797
Nifer y tudalennau	4
Cyfnodolyn	Proceedings of the National Academy of Sciences of the United States of America
Cyfrol	106
Rhif cyhoeddi	31
Dyddiad ar-lein cynnar	30 Gorff 2009
Dynodwyr Gwrthrych Digidol (DOIs)	https://doi.org/10.1073/pnas.0905845106
Statws	Cyhoeddwyd - 2009

Mynediad at Ddogfen

10.1073/pnas.0905845106

http://hdl.handle.net/2160/4529

Cysylltiad parhaol

Dolen barhaus

Dyfynnu hyn

Hollingsworth , P. M., Forrest, L. L., Spouge, J. L., Hajibabaei, M., Ratnasingham, S., van der Bank, M., Chase, M. W., Cowan, R. S., Erickson, D. L., Fazekas, A. J., Graham, S. W., James, K. E., Kim, K-J., Kress, W. J., Schneider, H., van AlphenStahl, J., Barrett, S. C. H., van den Berg, C., Bogarin, D., ... Little, D. P. (2009). A DNA Barcode for land plants. Proceedings of the National Academy of Sciences of the United States of America, 106(31), 12794-12797. https://doi.org/10.1073/pnas.0905845106

@article{d9c5d773d6a74e1d8f5f9dc026019234,

title = "A DNA Barcode for land plants",

abstract = "DNA barcoding involves sequencing a standard region of DNA as a tool for species identification. However, there has been no agreement on which region(s) should be used for barcoding land plants. To provide a community recommendation on a standard plant barcode, we have compared the performance of 7 leading candidate plastid DNA regions (atpF–atpH spacer, matK gene, rbcL gene, rpoB gene, rpoC1 gene, psbK–psbI spacer, and trnH–psbA spacer). Based on assessments of recoverability, sequence quality, and levels of species discrimination, we recommend the 2-locus combination of rbcL+matK as the plant barcode. This core 2-locus barcode will provide a universal framework for the routine use of DNA sequence data to identify specimens and contribute toward the discovery of overlooked species of land plants.",

author = "Hollingsworth, {Peter M} and Forrest, {Laura L.} and Spouge, {John L.} and Mehrdad Hajibabaei and Sujeevan Ratnasingham and {van der Bank}, Michelle and Chase, {Mark W.} and Cowan, {Robyn S.} and Erickson, {David L.} and Fazekas, {Aron J.} and Graham, {Sean W.} and James, {Karen E.} and Ki-Joong Kim and Kress, {W. John} and Harald Schneider and {van AlphenStahl}, Jonathan and Barrett, {Spencer C. H.} and {van den Berg}, Cassio and Diego Bogarin and Burgess, {Kevin S.} and Cameron, {Kenneth M.} and Mark Carine and Juliana Chacon and Alexandra Clark and Clarkson, {James J.} and Ferozah Conrad and Devey, {Dion S.} and Hedderson, {Terry A. J.} and Ford, {C. S.} and Hollingsworth, {Michelle L.} and Husband, {Brian C.} and Kelly, {Laura J.} and Kesanakurti, {Prasad R.} and Kim, {Jung Sung} and Young-Dong Kim and Renaud Lahaye and Hae-Lim Lee and Long, {David G.} and Santiago Madri{\~n}{\'a}n and Olivier Maurin and Isabelle Meusnier and Newmaster, {Steven G.} and Chong-Wook Park and Percy, {Diana M.} and Gitte Petersen and Richardson, {J. E.} and Salazar, {Gerardo A.} and Vincent Savolainen and Ole Seberg and Wilkinson, {M. J.} and Dong-Keun Yi and Little, {Damon P.}",

note = "Hollingsworth, P. M., Forrest, L. L., Spouge, J. L., Hajibabaei, M., Ratnasingham, S., van der Bank, M., Chase, M. W., Cowan, R.S., Erickson, D. L., Fazekas, A. J., Graham, S.W., James, K. E., Kim, K.-J., Kress, W. J., Schneider, H., van Alphen Stahl, J., Barrett, S. C. H., van den Berg, C., Bogarin, D., Burgess, K. S., Cameron, K. M., Carine, M., Chacon, J., Clark, A. C., Conrad, F., Devey, D., Clarkson, J., Ford, C. S., Hedderson, T. A. J., Hollingsworth, M. L., Husband, B. C., Kelly, L. J., Kesanakurti, P. R., Kim, J. S., Kim, Y. D., Lahaye, R., Lee H.-L., Long, D. G., Madrigan, S., Maurin, O., Meusnier, I., Newmaster, S. G, Park ,C.-W., Percy, D. M., Petersen, G., Richardson, J. E., Salazar, G. A., Savolainen, V., Seberg, O., Wilkinson, M. J., Yi, D.-K., Little, D. P. (2009). A DNA Barcode for land plants. Proceedings of the National Academy of Sciences of the USA, 106, (31), 12794-12797. Sponsorship: Alfred P. Sloan Foundation, Gordon and Betty Moore Foundation, Genome Canada, Scottish Government's Rural and Environment Research and Analysis Directorate, Royal Society, South African National Research Foundation, Intramural Research Program of the National Library of Medicine, National Institutes of Health, and Consortium for the Barcode of Life.",

year = "2009",

doi = "10.1073/pnas.0905845106",

language = "English",

volume = "106",

pages = "12794--12797",

journal = "Proceedings of the National Academy of Sciences of the United States of America",

issn = "0027-8424",

publisher = "National Academy of Sciences",

number = "31",

}

Hollingsworth , PM, Forrest, LL, Spouge, JL, Hajibabaei, M, Ratnasingham, S, van der Bank, M, Chase, MW, Cowan, RS, Erickson, DL, Fazekas, AJ, Graham, SW, James, KE, Kim, K-J, Kress, WJ, Schneider, H, van AlphenStahl, J, Barrett, SCH, van den Berg, C, Bogarin, D, Burgess, KS, Cameron, KM, Carine, M, Chacon, J, Clark, A, Clarkson, JJ, Conrad, F, Devey, DS, Hedderson, TAJ, Ford, CS, Hollingsworth, ML, Husband, BC, Kelly, LJ, Kesanakurti, PR, Kim, JS, Kim, Y-D, Lahaye, R, Lee, H-L, Long, DG, Madriñán, S, Maurin, O, Meusnier, I, Newmaster, SG, Park, C-W, Percy, DM, Petersen, G, Richardson, JE, Salazar, GA, Savolainen, V, Seberg, O, Wilkinson, MJ, Yi, D-K & Little, DP 2009, 'A DNA Barcode for land plants', Proceedings of the National Academy of Sciences of the United States of America, cyfrol. 106, rhif 31, tt. 12794-12797. https://doi.org/10.1073/pnas.0905845106

TY - JOUR

T1 - A DNA Barcode for land plants

AU - Hollingsworth , Peter M

AU - Forrest, Laura L.

AU - Spouge, John L.

AU - Hajibabaei, Mehrdad

AU - Ratnasingham, Sujeevan

AU - van der Bank, Michelle

AU - Chase, Mark W.

AU - Cowan, Robyn S.

AU - Erickson, David L.

AU - Fazekas, Aron J.

AU - Graham, Sean W.

AU - James, Karen E.

AU - Kim, Ki-Joong

AU - Kress, W. John

AU - Schneider, Harald

AU - van AlphenStahl, Jonathan

AU - Barrett, Spencer C. H.

AU - van den Berg, Cassio

AU - Bogarin, Diego

AU - Burgess, Kevin S.

AU - Cameron, Kenneth M.

AU - Carine, Mark

AU - Chacon, Juliana

AU - Clark, Alexandra

AU - Clarkson, James J.

AU - Conrad, Ferozah

AU - Devey, Dion S.

AU - Hedderson, Terry A. J.

AU - Ford, C. S.

AU - Hollingsworth, Michelle L.

AU - Husband, Brian C.

AU - Kelly, Laura J.

AU - Kesanakurti, Prasad R.

AU - Kim, Jung Sung

AU - Kim, Young-Dong

AU - Lahaye, Renaud

AU - Lee, Hae-Lim

AU - Long, David G.

AU - Madriñán, Santiago

AU - Maurin, Olivier

AU - Meusnier, Isabelle

AU - Newmaster, Steven G.

AU - Park, Chong-Wook

AU - Percy, Diana M.

AU - Petersen, Gitte

AU - Richardson, J. E.

AU - Salazar, Gerardo A.

AU - Savolainen, Vincent

AU - Seberg, Ole

AU - Wilkinson, M. J.

AU - Yi, Dong-Keun

AU - Little, Damon P.

N1 - Hollingsworth, P. M., Forrest, L. L., Spouge, J. L., Hajibabaei, M., Ratnasingham, S., van der Bank, M., Chase, M. W., Cowan, R.S., Erickson, D. L., Fazekas, A. J., Graham, S.W., James, K. E., Kim, K.-J., Kress, W. J., Schneider, H., van Alphen Stahl, J., Barrett, S. C. H., van den Berg, C., Bogarin, D., Burgess, K. S., Cameron, K. M., Carine, M., Chacon, J., Clark, A. C., Conrad, F., Devey, D., Clarkson, J., Ford, C. S., Hedderson, T. A. J., Hollingsworth, M. L., Husband, B. C., Kelly, L. J., Kesanakurti, P. R., Kim, J. S., Kim, Y. D., Lahaye, R., Lee H.-L., Long, D. G., Madrigan, S., Maurin, O., Meusnier, I., Newmaster, S. G, Park ,C.-W., Percy, D. M., Petersen, G., Richardson, J. E., Salazar, G. A., Savolainen, V., Seberg, O., Wilkinson, M. J., Yi, D.-K., Little, D. P. (2009). A DNA Barcode for land plants. Proceedings of the National Academy of Sciences of the USA, 106, (31), 12794-12797. Sponsorship: Alfred P. Sloan Foundation, Gordon and Betty Moore Foundation, Genome Canada, Scottish Government's Rural and Environment Research and Analysis Directorate, Royal Society, South African National Research Foundation, Intramural Research Program of the National Library of Medicine, National Institutes of Health, and Consortium for the Barcode of Life.

PY - 2009

Y1 - 2009

N2 - DNA barcoding involves sequencing a standard region of DNA as a tool for species identification. However, there has been no agreement on which region(s) should be used for barcoding land plants. To provide a community recommendation on a standard plant barcode, we have compared the performance of 7 leading candidate plastid DNA regions (atpF–atpH spacer, matK gene, rbcL gene, rpoB gene, rpoC1 gene, psbK–psbI spacer, and trnH–psbA spacer). Based on assessments of recoverability, sequence quality, and levels of species discrimination, we recommend the 2-locus combination of rbcL+matK as the plant barcode. This core 2-locus barcode will provide a universal framework for the routine use of DNA sequence data to identify specimens and contribute toward the discovery of overlooked species of land plants.

AB - DNA barcoding involves sequencing a standard region of DNA as a tool for species identification. However, there has been no agreement on which region(s) should be used for barcoding land plants. To provide a community recommendation on a standard plant barcode, we have compared the performance of 7 leading candidate plastid DNA regions (atpF–atpH spacer, matK gene, rbcL gene, rpoB gene, rpoC1 gene, psbK–psbI spacer, and trnH–psbA spacer). Based on assessments of recoverability, sequence quality, and levels of species discrimination, we recommend the 2-locus combination of rbcL+matK as the plant barcode. This core 2-locus barcode will provide a universal framework for the routine use of DNA sequence data to identify specimens and contribute toward the discovery of overlooked species of land plants.

U2 - 10.1073/pnas.0905845106

DO - 10.1073/pnas.0905845106

M3 - Article

SN - 0027-8424

VL - 106

SP - 12794

EP - 12797

JO - Proceedings of the National Academy of Sciences of the United States of America

JF - Proceedings of the National Academy of Sciences of the United States of America

IS - 31

ER -

A DNA Barcode for land plants

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