Neidio i’r brif dudalen lywio Neidio i chwilio Neidio i’r prif gynnwys

A roadmap for equitable reuse of public microbiome data

  • The Data Reuse Consortium
  • , Laura A. Hug
  • , Roland Hatzenpichler
  • , Cristina Moraru
  • , André R. Soares
  • , Folker Meyer
  • , Anke Heyder
  • , B. Zwirzitz
  • , R. M. Ziels
  • , J. Zhu
  • , Y. Zhang
  • , W. Xiu
  • , M. Wu
  • , T. Woyke
  • , A. Z. Worden
  • , T. A. Williams
  • , C. L. Williams
  • , A. Wichels
  • , J. L. Weissman
  • , L. C. Weiss
  • T. Weir, C. E. Wegner, Y. Wang, S. Wang, C. J. Walsh, M. Wagner, F. A.B. von Meijenfeldt, J. Vierheilig, X. Vázquez-Campos, L. E. Valentin-Alvarado, J. Ugalde, M. Tsiknia, J. Truu, G. Trubl, C. B. Trivedi, R. Y. Tito, P. Thieringer, D. Tamarit, S. Suzuki, B. Sures, R. Sukumaran, N. Stopnisek, T. Stoikidou, R. Stöckl, A. D. Steen, J. Starke, J. E. Stajich, T. L. Stach, P. Srivastava, C. G. Sprehn, D. R. Speth, A. Sorbie, O. L. Snoeyenbos-West, D. Skliros, E. T. Sieradzki, B. Siebers, I. Sharon, M. B. Shah, M. M. Seyoum, J. Sekar, A. Sekar, L. Sehnal, O. Schwengers, C. Schubert, R. A. Schmitz, M. Schloter, G. Schaible, R. B. Schäfer, T. Sbaffi, J. H. Saw, M. S. Sarhan, L. Santoferrara, M. G. Santiago-Martínez, J. S. Saini, S. E. Ruff, S. Rückert, J. A. Rothman, T. Roloff, R. R. Rohwer, L. M. Rodriguez-R, A. Rodríguez-Gijón, C. Robinson, C. Rinke, E. Rech, P. Rausch, T. Rattei, S. Ramganesh, E. K. Quaye, T. Priest, M. Poyet, J. Plewka, B. Peyton, C. Pavloudi, P. V. Pascoal, R. H. Parry, D. H. Parks, K. M. Pappas, J. Osvatic, O. Osuolale, S. Neuhauser, J. D. Neufeld, M. K. Nata’ala, J. Muschiol, S. Miravet-Verde, V. Mikryukov, G. Michoud, J. L. Meyer, D. R. Mende, C. Melkonian, D. V. Meier, C. J. Meehan, S. Meaden, A. Marshall, L. Malfertheiner, S. Majidian, A. Mahnert, S. Lücker, R. N. Lima, S. S. Li, M. Lezcano, F. Leese, S. H. Lau, A. A. Lateef, X. Lan, K. Lahmers, C. C. Laczny, S. L. La Rosa, N. C. Kyrpides, K. Kujala, K. Kormas, E. V. Koonin, A. K. Koech, R. Knight, I. Klarenberg, E. A. Kiledal, M. Kellom, C. Keating, Y. M. Kaspareit, E. Karimi, S. P. Jungbluth, Z. J. Jay, N. Ilott, Y. Hwang, L. W. Hugerth, S. Hou, E. F. Hom, K. J. Hoff, S. S. Hivarkar, T. C. Hitch, L. Hillary, M. Hess, P. J. Hesketh-Best, M. Herold, M. Henson, P. Hellwig, R. M. Hechler, M. Hay, C. Hassenrück, L. Hart, J. N. Hamm, T. L. Hamilton, N. Hamamura, M. Guzel, B. Valenzuela Guerrero, M. Groussin, H. P. Grossart, A. C. Gregory, R. Gregor, C. Greening, C. Gopalakrishnappa, R. A. González-Pech, G. B. Gloor, D. Gittins, D. Giovannelli, M. O. Gessner, I. R. Gerhardt, P. Geesink, A. M. Gada, J. A. Fuhrman, P. Foucault, P. Ferretti, R. M.W. Ferguson, A. Petrovic Fabijan, C. L. Ettinger, T. J.G. Ettema, S. P. Esser, J. C. Engelmann, S. Egbert, R. Edwards, A. Edwards, M. Džunková, X. Dong, S. M. Dittami, J. Debelius, L. M. Arake de Tacca, A. De Santiago, V. De Anda, A. Daebeler, C. R. Currie, R. Costa, I. Chatzigiannidou, T. Cernava, J. G. Caporaso, A. Cansdale, Z. M. Burcham, E. Buelow, A. Bremges, W. Brazelton, V. S. Brauer, T. L. Bornemann, G. Bonilla-Rosso, J. Boldt, K. Block, J. A. Blakeley-Ruiz, A. Bissett, J. Biddle, N. Bejerman, A. Bartholomäus, B. Baker, F. Bak, J. A. Baeza, A. S. Andrei, R. Anderson, K. Anantharaman, L. Alteio, I. M. Adesiyan, N. Abdulkadir, A. Abdalrahem, R. Z. Abdallah, Alexander J. Probst*
*Awdur cyfatebol y gwaith hwn
  • University of Waterloo
  • Montana State University
  • University of Duisburg-Essen
  • Ruhr University Bochum
  • BOKU University
  • University of British Columbia
  • Chinese University of Hong Kong
  • University of Rhode Island
  • China University of Geoscience
  • Queensland University of Technology
  • Joint Genome Institute
  • Marine Biological Laboratory
  • University of Bath
  • Alfred Wegener Institute for Polar and Marine Research
  • City College of New York
  • Universitätsklinik Marien Hospital Herne
  • Colorado State University
  • Heinrich Heine University Düsseldorf
  • School of Life Sciences and Biotechnology
  • Shanghai Jiao Tong University
  • Department of Microbiology
  • Peter Doherty Institute
  • University of Vienna
  • Royal Netherlands Institute for Sea Research
  • TU Wien
  • Interuniversity Cooperation Centre Water & Health
  • UNSW Sydney
  • California Coast University
  • Universidad Andrés Bello
  • Agricultural University of Athens
  • University of Tartu
  • Lawrence Livermore National Laboratory
  • LGC Biosearch Technology
  • KU Leuven
  • Biotechnology Institute
  • University of California, Santa Barbara
  • Utrecht University
  • RIKEN Cluster for Pioneering Research
  • University of Kerala
  • National Laboratory of Health
  • Queen's University Belfast
  • University of Regensburg
  • University of Tennessee at Knoxville
  • University of California, Riverside
  • Cardiff University
  • Ludwig-Maximilians-Universität München
  • University of Arizona
  • Aarhus University
  • Tel Hai Academic College
  • University of Arkansas at Fayetteville
  • M S Swaminathan Research Foundation
  • Universitätsklinikum Tübingen
  • Masaryk University
  • Justus-Liebig-Universität Gießen
  • ETH Zurich
  • Kiel University
  • Research Unit for Comparative Microbiome Analysis
  • Italian National Research Council
  • George Washington University
  • Eurac Research
  • Hofstra University
  • University of Connecticut
  • École Polytechnique Fédérale de Lausanne
  • University of Zurich
  • The University of Texas at Austin
  • Universität Innsbruck
  • Aalborg University
  • Science for Life Laboratory
  • Indiana University Bloomington
  • National Institute of S & T in Synthetic Biology/EMBRAPA
  • J.J College of Arts and Science (Autonomous)
  • European Marine Biological Resource Centre-European Research Infrastructure Consortium (EMBRC-ERIC)
  • Embrapa Cenargen
  • National and Kapodistrian University of Athens
  • Medical University of Vienna
  • Elizade University
  • Leipzig University
  • Leibniz Institute for Agricultural Engineering and Bioeconomy
  • GEOMAR Helmholtz Centre for Ocean Research Kiel
  • University of Florida
  • University of Amsterdam
  • Wageningen University & Research
  • University of Bayreuth
  • Nottingham Trent University
  • University of York
  • Department of Biology
  • RMIT Europe
  • University of Lausanne
  • Medical University of Graz
  • Radford University
  • Estrada da Ribeira
  • Monash University
  • IMDEA Water Institute
  • Hong Kong University
  • University of Ilorin
  • University of Helsinki
  • Nankai University
  • Virginia Tech
  • University of Luxembourg
  • Norwegian University of Life Sciences
  • Natural Resources Institute Finland
  • University of Thessaly
  • National Library of Medicine (NLM)
  • Masinde Muliro University of Science and Technology
  • University of California, San Diego
  • Shu Chien-Gene Lay Department of Bioengineering
  • Vrije Universiteit Amsterdam
  • University of Michigan
  • Durham University
  • Plateau de Moulon
  • Lawrence Berkeley National Laboratory
  • University of Oxford
  • Harvard University
  • Uppsala University
  • Southern University of Science and Technology
  • University of Mississippi
  • Universität Greifswald
  • Agharkar Research Institute
  • RWTH Aachen University
  • University of California, Davis
  • University of Minnesota
  • Luxembourg Institute of Science and Technology
  • Northern Illinois University
  • Otto-von-Guericke University Magdeburg
  • University of Toronto
  • Royal Veterinary College
  • Leibniz Institute for Baltic Sea Research
  • Kyushu University
  • Universidad de Antofagasta
  • Leibniz Institute of Freshwater Ecology and Inland Fisheries
  • University of Potsdam
  • University of Calgary
  • Massachusetts Institute of Technology
  • Pennsylvania State University
  • Western University
  • University of California, Berkeley
  • University of Naples Federico II
  • Technische Universität Berlin
  • Embrapa Agricultura Digital
  • Sokoto State University
  • University of Southern California
  • Queen Saovabha Memorial Institute
  • University of Chicago
  • University of Essex
  • Westmead Institute for Medical Research
  • The University of Sydney
  • Washington University in St. Louis
  • Flinders University
  • Universitat de València
  • Third Institute of Oceanography
  • Station Biologique de Roscoff
  • Johns Hopkins University
  • University of Georgia
  • Czech Academy of Sciences, Biology Centre
  • McMaster University
  • Instituto Superior Técnico
  • Technical University of Denmark
  • University of Southampton
  • Northern Arizona University
  • Université Grenoble Alpes
  • Evonik Operations GmbH
  • University of Utah
  • Agroscope
  • Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures
  • Ruhrlandklinik
  • North Carolina State University
  • CSIRO Oceans and Atmosphere
  • University of Delaware
  • Consejo Nacional de Investigaciones Científicas y Técnicas
  • Telegrafenberg
  • Austrian Institute of Technology
  • Clemson University
  • Universidad Católica del Norte
  • Carleton College
  • University of Wisconsin Carbone Cancer Center
  • Austrian Competence Centre for Feed and Food Quality, Safety & Innovation (Austria)
  • University of Medical Sciences, Ondo
  • Vandoeuvre-les-nancy
  • College of Biotechnology

Allbwn ymchwil: Cyfraniad at gyfnodolynErthygl Adolyguadolygiad gan gymheiriaid

8 Dyfyniadau (Scopus)

Crynodeb

Science benefits from rapid open data sharing, but current guidelines for data reuse were established two decades ago, when databases were several million times smaller than they are today. These guidelines are largely unfamiliar to the scientific community, and, owing to the rapid increase in biological data generated in the past decade, they are also outdated. As a result, there is a lack of community standards suited to the current landscape and inconsistent implementation of data sharing policies across institutions. Here we discuss current sequence data sharing policies and their benefits and drawbacks, and present a roadmap to establish guidelines for equitable sequence data reuse, developed in consultation with a data consortium of 167 microbiome scientists. We propose the use of a Data Reuse Information (DRI) tag for public sequence data, which will be associated with at least one Open Researcher and Contributor ID (ORCID) account. The machine-readable DRI tag indicates that the data creators prefer to be contacted before data reuse, and simultaneously provides data consumers with a mechanism to get in touch with the data creators. The DRI aims to facilitate and foster collaborations, and serve as a guideline that can be expanded to other data types.

Iaith wreiddiolSaesneg
Tudalennau (o-i)2384-2395
Nifer y tudalennau12
CyfnodolynNature Microbiology
Cyfrol10
Rhif cyhoeddi10
Dyddiad ar-lein cynnar26 Medi 2025
Dynodwyr Gwrthrych Digidol (DOIs)
StatwsCyhoeddwyd - 31 Hyd 2025

Ôl bys

Gweld gwybodaeth am bynciau ymchwil 'A roadmap for equitable reuse of public microbiome data'. Gyda’i gilydd, maen nhw’n ffurfio ôl bys unigryw.

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