Bioinformatics in the orphan crops

Ian P. Armstead; Lin S. Huang; Adriana Ravagnani; Paul R. Robson; Helen J. Ougham

doi:10.1093/bib/bbp036

Bioinformatics in the orphan crops

Ian P. Armstead, Lin S. Huang, Adriana Ravagnani, Paul R. Robson, Helen J. Ougham

Adran y Gwyddorau Bywyd

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

37 Dyfyniadau (Scopus)

Crynodeb

Orphan crops are those which are grown as food, animal feed or other crops of some importance in agriculture, but which have not yet received the investment of research effort or funding required to develop significant public bioinformatics resources. Where an orphan crop is related to a well-characterised model plant species, comparative genomics and bioinformatics can often, though not always, be exploited to assist research and crop improvement. This review addresses some challenges and opportunities presented by bioinformatics in the orphan crops, using three examples: forage grasses from the genera Lolium and Festuca, forage legumes and the second generation energy crop Miscanthus.

Iaith wreiddiol	Saesneg
Tudalennau (o-i)	645-653
Nifer y tudalennau	9
Cyfnodolyn	Briefings in Bioinformatics
Cyfrol	10
Rhif cyhoeddi	6
Dynodwyr Gwrthrych Digidol (DOIs)	https://doi.org/10.1093/bib/bbp036
Statws	Cyhoeddwyd - 04 Medi 2009

Mynediad at Ddogfen

10.1093/bib/bbp036

http://hdl.handle.net/2160/4440

Cysylltiad parhaol

Dolen barhaus

1 Wedi Gorffen

Molecular Genetics of Miscanthus
Donnison, I. (Prif Ymchwilydd) & Clifton-Brown, J. (Prif Ymchwilydd)
Biotechnology and Biological Sciences Research Council
01 Ebr 2008 → 31 Maw 2012
Prosiect: Ymchwil a ariannwyd yn allanol

Dyfynnu hyn

@article{84f2766bb070416fb59db408cc513062,

title = "Bioinformatics in the orphan crops",

abstract = "Orphan crops are those which are grown as food, animal feed or other crops of some importance in agriculture, but which have not yet received the investment of research effort or funding required to develop significant public bioinformatics resources. Where an orphan crop is related to a well-characterised model plant species, comparative genomics and bioinformatics can often, though not always, be exploited to assist research and crop improvement. This review addresses some challenges and opportunities presented by bioinformatics in the orphan crops, using three examples: forage grasses from the genera Lolium and Festuca, forage legumes and the second generation energy crop Miscanthus.",

keywords = "comparative genomics, crop improvement , genome sequencing, orphan crops, plant breeding",

author = "Armstead, {Ian P.} and Huang, {Lin S.} and Adriana Ravagnani and Robson, {Paul R.} and Ougham, {Helen J.}",

note = "Armstead, I. P., Huang, L., Ravagnani, A., Robson, P. R., Ougham, H. J. (2009). Bioinformatics in the orphan crops. Briefings in Bioinformatics, 10 (6), 645-653. IMPF: 07.32 Sponsorship: BBSRC",

year = "2009",

month = sep,

day = "4",

doi = "10.1093/bib/bbp036",

language = "English",

volume = "10",

pages = "645--653",

journal = "Briefings in Bioinformatics",

issn = "1477-4054",

publisher = "Oxford University Press",

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}

TY - JOUR

T1 - Bioinformatics in the orphan crops

AU - Armstead, Ian P.

AU - Huang, Lin S.

AU - Ravagnani, Adriana

AU - Robson, Paul R.

AU - Ougham, Helen J.

N1 - Armstead, I. P., Huang, L., Ravagnani, A., Robson, P. R., Ougham, H. J. (2009). Bioinformatics in the orphan crops. Briefings in Bioinformatics, 10 (6), 645-653. IMPF: 07.32 Sponsorship: BBSRC

PY - 2009/9/4

Y1 - 2009/9/4

N2 - Orphan crops are those which are grown as food, animal feed or other crops of some importance in agriculture, but which have not yet received the investment of research effort or funding required to develop significant public bioinformatics resources. Where an orphan crop is related to a well-characterised model plant species, comparative genomics and bioinformatics can often, though not always, be exploited to assist research and crop improvement. This review addresses some challenges and opportunities presented by bioinformatics in the orphan crops, using three examples: forage grasses from the genera Lolium and Festuca, forage legumes and the second generation energy crop Miscanthus.

AB - Orphan crops are those which are grown as food, animal feed or other crops of some importance in agriculture, but which have not yet received the investment of research effort or funding required to develop significant public bioinformatics resources. Where an orphan crop is related to a well-characterised model plant species, comparative genomics and bioinformatics can often, though not always, be exploited to assist research and crop improvement. This review addresses some challenges and opportunities presented by bioinformatics in the orphan crops, using three examples: forage grasses from the genera Lolium and Festuca, forage legumes and the second generation energy crop Miscanthus.

KW - comparative genomics

KW - crop improvement

KW - genome sequencing

KW - orphan crops

KW - plant breeding

U2 - 10.1093/bib/bbp036

DO - 10.1093/bib/bbp036

M3 - Article

C2 - 19734255

SN - 1477-4054

VL - 10

SP - 645

EP - 653

JO - Briefings in Bioinformatics

JF - Briefings in Bioinformatics

IS - 6

ER -

Bioinformatics in the orphan crops

Crynodeb

Mynediad at Ddogfen

Cysylltiad parhaol

Ôl bys

Prosiectau

Molecular Genetics of Miscanthus

Dyfynnu hyn