Finding needles in haystacks: Linking scientific names, reference specimens and molecular data for Fungi

Conrad L. Schoch, Barbara Robbertse, Vincent Robert, Duong Vu, Gianluigi Cardinali, Laszlo Irinyi, Wieland Meyer, R. Henrik Nilsson, Karen W. Hughes, Andrew N. Miller, Paul M. Kirk, Kessy Abarenkov, M. Catherine Aime, Hiran A. Ariyawansa, Martin. Bidartondo, Ten Boekhout, B Buyck, Qing Cai, Jie Chen, Ana CrespoPedro W Crous, Ulrike Damm, Z. Wilhelm de Beer, Bryn T. M. Dentinger, Pradeep K. Divakar, Margarita Duenas, Nicolas Geau, Katerina Fliegerova, Miguel A. Garcia, Zai-Wei Ge, Gareth Wyn Griffith, Johannes Z Groenewald, Marizeth Groenewald, Martin Grube, Marieka Gryzenhout, Cécile Gueidan, Liangdong Guo, Sarah Hambleton, Richard Hamelin, Karen Hansen, Valérie Hofstetter, Seung-Beom Hong, Jos Houbraken, Kevin D. Hyde, Patrik Inderbitzin, Peter R Johnston, Samantha C. Karunarathna, Urmas Koljalg, Gabor M. Kovacs, Ekaphan Kraichak, Krisztina Krizsan, Cletus P. Kurtzman, Karl-Henrik Larsson, Steven Leavitt, Peter M. Letcher, Kare Liimatainen, Jian-Kui Liu, Jean D. Lodge, Janet J. Luangsa-Ard, H Thorsten Lumbsch, Sajeewa S. N. Maharachchikumbura, Dimuthu Manamgoda, María P. Martín, Andrew M. Minnis, Jean-Marc Moncalvo, Giuseppina Mulè, Karen K. Nakasone, Tuula Niskanen, Ibai Olariaga, Tamás Papp, Tamás Petkovits, Raquel Pino-Bodas, Martha J. Powell, Huzefa A. Raja, Dirk Redecker, J.M. Sarmiento-Ramirez, Keith A. Seifert, Bhushan Shrestha, Soili Stenroos, Benjamin Stielow, Sung-Oui Suh, Kazuaki Tanaka, Leho Tedersoo, M. Teresa Telleria, Dhanushka Udayanga, Wendy A. Untereiner, Javier Dieguez-Uribeondo, Krishna V. Subbarao, Csaba Vágvölgyi36, Johann Visagie, Kerstin Voigt, Donald M. Walker, Bevan S. Weir, Michael Weiß, Nalin N. Wijayawardene, Michael J Wingfield, J. P. Xu, Yang Zhu L., Ning Zhang, Wen-Ying Zhuang, Scott Federhen

Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

309 Dyfyniadau (Scopus)
409 Wedi eu Llwytho i Lawr (Pure)

Crynodeb

DNA phylogenetic comparisons have shown that morphology-based species recognition
often underestimates fungal diversity. Therefore, the need for accurate DNA sequence
data, tied to both correct taxonomic names and clearly annotated specimen data, has
never been greater. Furthermore, the growing number of molecular ecology and microbiome
projects using high-throughput sequencing require fast and effective methods for
en masse species assignments. In this article, we focus on selecting and re-annotating a
set of marker reference sequences that represent each currently accepted order of Fungi.
The particular focus is on sequences from the internal transcribed spacer region in the
nuclear ribosomal cistron, derived from type specimens and/or ex-type cultures. Reannotated
and verified sequences were deposited in a curated public database at the
National Center for Biotechnology Information (NCBI), namely the RefSeq Targeted Loci
(RTL) database, and will be visible during routine sequence similarity searches with
NR_prefixed accession numbers. A set of standards and protocols is proposed to improve
the data quality of new sequences, and we suggest how type and other reference
sequences can be used to improve identification of Fungi.
Database URL: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA177353
Iaith wreiddiolSaesneg
Tudalennau (o-i)1-21
Nifer y tudalennau21
CyfnodolynDatabase: The Journal of Biological Databases and Curation
Rhif cyhoeddi2014
Dyddiad ar-lein cynnar28 Mai 2014
Dynodwyr Gwrthrych Digidol (DOIs)
StatwsCyhoeddwyd - 28 Mai 2014

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Gweld gwybodaeth am bynciau ymchwil 'Finding needles in haystacks: Linking scientific names, reference specimens and molecular data for Fungi'. Gyda’i gilydd, maen nhw’n ffurfio ôl bys unigryw.

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