FungalTraits: A user-friendly traits database of fungi and fungus-like stramenopiles

Sergei Põlme; Kessy Abarenkov; R. Henrik Nilsson; Björn D. Lindahl; Karina Engelbrecht Clemmensen; Havard Kauserud; Nhu Nguyen; Rasmus Kjøller; Scott T. Bates; Petr Baldrian; Tobias Guldberg Frøslev; Kristjan Adojaan; Alfredo Vizzini; Ave Suija; Donald Pfister; Hans Otto Baral; Helle Järv; Hugo Madrid; Jenni Nordén; Jian Kui Liu; Julia Pawlowska; Kadri Põldmaa; Kadri Pärtel; Kadri Runnel; Karen Hansen; Karl Henrik Larsson; Kevin David Hyde; Marcelo Sandoval-Denis; Matthew E. Smith; Merje Toome-Heller; Nalin N. Wijayawardene; Nelson Menolli; Nicole K. Reynolds; Rein Drenkhan; Sajeewa S.N. Maharachchikumbura; Tatiana B. Gibertoni; Thomas Læssøe; William Davis; Yuri Tokarev; Adriana Corrales; Adriene Mayra Soares; Ahto Agan; Alexandre Reis Machado; Andrés Argüelles-Moyao; Andrew Detheridge; Angelina de Meiras-Ottoni; Annemieke Verbeken; Arun Kumar Dutta; Bao Kai Cui; C. K. Pradeep; César Marín; Daniel Stanton; Daniyal Gohar; Dhanushka N. Wanasinghe; Eveli Otsing; Farzad Aslani; Gareth W. Griffith; Thorsten H. Lumbsch; Hans Peter Grossart; Hossein Masigol; Ina Timling; Inga Hiiesalu; Jane Oja; John Y. Kupagme; József Geml; Julieta Alvarez-Manjarrez; Kai Ilves; Kaire Loit; Kalev Adamson; Kazuhide Nara; Kati Küngas; Keilor Rojas-Jimenez; Krišs Bitenieks; Laszlo Irinyi; László Laszlo Nagy; Liina Soonvald; Li Wei Zhou; Lysett Wagner; M. Catherine Aime; Maarja Öpik; María Isabel Mujica; Martin Metsoja; Martin Ryberg; Martti Vasar; Masao Murata; Matthew P. Nelsen; Michelle Cleary; Milan C. Samarakoon; Mingkwan Doilom; Mohammad Bahram; Niloufar Hagh-Doust; Olesya Dulya; Peter Johnston; Petr Kohout; Qian Chen; Qing Tian; Rajasree Nandi; Rasekh Amiri; Rekhani Hansika Perera; Renata dos Santos Chikowski; Renato L. Mendes-Alvarenga; Roberto Garibay-Orijel; Robin Gielen; Rungtiwa Phookamsak; Ruvishika S. Jayawardena; Saleh Rahimlou; Samantha C. Karunarathna; Saowaluck Tibpromma; Shawn P. Brown; Siim Kaarel Sepp; Sunil Mundra; Zhu Hua Luo; Tanay Bose; Tanel Vahter; Tarquin Netherway; Teng Yang; Tom May; Torda Varga; Wei Li; Victor Rafael Matos Coimbra; Virton Rodrigo Targino de Oliveira; Vitor Xavier de Lima; Vladimir S. Mikryukov; Yongzhong Lu; Yosuke Matsuda; Yumiko Miyamoto; Urmas Kõljalg; Leho Tedersoo

doi:10.1007/s13225-020-00466-2

FungalTraits: A user-friendly traits database of fungi and fungus-like stramenopiles

Sergei Põlme^*
, Kessy Abarenkov
, R. Henrik Nilsson
, Björn D. Lindahl
, Karina Engelbrecht Clemmensen
, Havard Kauserud
, Nhu Nguyen
, Rasmus Kjøller
, Scott T. Bates
, Petr Baldrian
, Tobias Guldberg Frøslev
, Kristjan Adojaan
, Alfredo Vizzini
, Ave Suija
, Donald Pfister
, Hans Otto Baral
, Helle Järv
, Hugo Madrid
, Jenni Nordén
, Jian Kui Liu

Julia Pawlowska, Kadri Põldmaa, Kadri Pärtel, Kadri Runnel, Karen Hansen, Karl Henrik Larsson, Kevin David Hyde, Marcelo Sandoval-Denis, Matthew E. Smith, Merje Toome-Heller, Nalin N. Wijayawardene, Nelson Menolli, Nicole K. Reynolds, Rein Drenkhan, Sajeewa S.N. Maharachchikumbura, Tatiana B. Gibertoni, Thomas Læssøe, William Davis, Yuri Tokarev, Adriana Corrales, Adriene Mayra Soares, Ahto Agan, Alexandre Reis Machado, Andrés Argüelles-Moyao, Andrew Detheridge, Angelina de Meiras-Ottoni, Annemieke Verbeken, Arun Kumar Dutta, Bao Kai Cui, C. K. Pradeep, César Marín, Daniel Stanton, Daniyal Gohar, Dhanushka N. Wanasinghe, Eveli Otsing, Farzad Aslani, Gareth W. Griffith, Thorsten H. Lumbsch, Hans Peter Grossart, Hossein Masigol, Ina Timling, Inga Hiiesalu, Jane Oja, John Y. Kupagme, József Geml, Julieta Alvarez-Manjarrez, Kai Ilves, Kaire Loit, Kalev Adamson, Kazuhide Nara, Kati Küngas, Keilor Rojas-Jimenez, Krišs Bitenieks, Laszlo Irinyi, László Laszlo Nagy, Liina Soonvald, Li Wei Zhou, Lysett Wagner, M. Catherine Aime, Maarja Öpik, María Isabel Mujica, Martin Metsoja, Martin Ryberg, Martti Vasar, Masao Murata, Matthew P. Nelsen, Michelle Cleary, Milan C. Samarakoon, Mingkwan Doilom, Mohammad Bahram, Niloufar Hagh-Doust, Olesya Dulya, Peter Johnston, Petr Kohout, Qian Chen, Qing Tian, Rajasree Nandi, Rasekh Amiri, Rekhani Hansika Perera, Renata dos Santos Chikowski, Renato L. Mendes-Alvarenga, Roberto Garibay-Orijel, Robin Gielen, Rungtiwa Phookamsak, Ruvishika S. Jayawardena, Saleh Rahimlou, Samantha C. Karunarathna, Saowaluck Tibpromma, Shawn P. Brown, Siim Kaarel Sepp, Sunil Mundra, Zhu Hua Luo, Tanay Bose, Tanel Vahter, Tarquin Netherway, Teng Yang, Tom May, Torda Varga, Wei Li, Victor Rafael Matos Coimbra, Virton Rodrigo Targino de Oliveira, Vitor Xavier de Lima, Vladimir S. Mikryukov, Yongzhong Lu, Yosuke Matsuda, Yumiko Miyamoto, Urmas Kõljalg, Leho Tedersoo

^*Awdur cyfatebol y gwaith hwn

Athrofa'r Gwyddorau Biolegol, Amgylcheddol a Gwledig

University of Tartu
Centre for Biodiversity Genomics
University of Gothenburg
Swedish University of Agricultural Sciences
University of Oslo
University of Hawaiʻi at Mānoa
University of Copenhagen
Purdue University Northwest
Czech Academy of Sciences
University of Turin
Harvard University
Independent Expert
SYNLAB Estonia
Universidad Santo Tomás
Universidad Mayor
Norwegian Institute for Nature Research
University of Electronic Science and Technology of China
University of Warsaw
Swedish Museum of Natural History
Mae Fah Luang University
Westerdijk Fungal Biodiversity Institute
University of Florida
Ministry for Primary Industries
Qujing Normal University
Federal Institute of São Paulo
Instituto de Botânica
Estonian University of Life Sciences
Universidade Federal de Pernambuco
Oak Ridge Institute for Science and Education
All-Russian Institute of Plant Protection
Universidad del Rosario
Universidade Federal Rural da Amazônia
Universidad Nacional Autónoma de México
Ghent University
West Bengal State University
Beijing Forestry University
Jawaharlal Nehru Tropical Botanic Garden and Research Institute
University of O'Higgins
Pontificia Universidad Católica de Chile
University of Minnesota
Kunming Institute of Botany
Field Museum of Natural History
Leibniz Institute of Freshwater Ecology and Inland Fisheries
University of Potsdam
University of Guilan
University of Alaska Fairbanks
Eszterhazy Karoly Catholic University
Centro Universitario Ciudad Vieja
The University of Tokyo
Universidad de Costa Rica
Latvian State Forest Research Institute "Silava"
The University of Sydney
Westmead Hospital
HUN-REN Szegedi Biológiai Kutatóközpont
Institut für Mikrobiologie der Bundeswehr
Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Knöll-Institut (HKI)
Purdue University West Lafayette
Uppsala University
Russian Academy of Sciences
Landcare Res, Soils & Landscape Team
University of Chittagong
University of Memphis
United Arab Emirates University
Ministry of Natural Resources
University of Pretoria
Chinese Academy of Sciences
Royal Botanic Gardens Victoria
Ocean University of China
Guizhou Institute of Technology
Mie University
Hokkaido University

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

911 Dyfyniadau (Scopus)

378 Wedi eu Llwytho i Lawr (Pure)

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The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies. Over the past decades, rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats. Yet, in spite of the progress of molecular methods, knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging. In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels. Combining the information from previous efforts such as FUNGuild and Fun^Fun together with involvement of expert knowledge, we reannotated 10,210 and 151 fungal and Stramenopila genera, respectively. This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera, designed for rapid functional assignments of environmental studies. In order to assign the trait states to fungal species hypotheses, the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences. On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1% dissimilarity threshold.

Iaith wreiddiol	Saesneg
Tudalennau (o-i)	1-16
Nifer y tudalennau	16
Cyfnodolyn	Fungal Diversity
Cyfrol	105
Rhif cyhoeddi	1
Dynodwyr Gwrthrych Digidol (DOIs)	https://doi.org/10.1007/s13225-020-00466-2
Statws	Cyhoeddwyd - 19 Ion 2021

Mynediad at Ddogfen

10.1007/s13225-020-00466-2

Accepted ManuscriptLlawysgrif awdur wedi’i dderbyn, 713 KB
Supplementary InformationData, 64 MBTrwydded: CC BY-NC

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Dolen i’r cyhoeddiad yn Scopus

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Põlme, S., Abarenkov, K., Henrik Nilsson, R., Lindahl, B. D., Clemmensen, K. E., Kauserud, H., Nguyen, N., Kjøller, R., Bates, S. T., Baldrian, P., Frøslev, T. G., Adojaan, K., Vizzini, A., Suija, A., Pfister, D., Baral, H. O., Järv, H., Madrid, H., Nordén, J., ... Tedersoo, L. (2021). FungalTraits: A user-friendly traits database of fungi and fungus-like stramenopiles. Fungal Diversity, 105(1), 1-16. https://doi.org/10.1007/s13225-020-00466-2

@article{912e04c830594d1ebd36cd5480c83e55,

title = "FungalTraits: A user-friendly traits database of fungi and fungus-like stramenopiles",

abstract = "The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies. Over the past decades, rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats. Yet, in spite of the progress of molecular methods, knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging. In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels. Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge, we reannotated 10,210 and 151 fungal and Stramenopila genera, respectively. This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera, designed for rapid functional assignments of environmental studies. In order to assign the trait states to fungal species hypotheses, the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences. On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1\% dissimilarity threshold.",

keywords = "Bioinformatics, Community ecology, Function, Fungal traits, Guild, High-throughput sequencing, Trophic modes",

author = "Sergei P{\~o}lme and Kessy Abarenkov and \{Henrik Nilsson\}, R. and Lindahl, \{Bj{\"o}rn D.\} and Clemmensen, \{Karina Engelbrecht\} and Havard Kauserud and Nhu Nguyen and Rasmus Kj{\o}ller and Bates, \{Scott T.\} and Petr Baldrian and Fr{\o}slev, \{Tobias Guldberg\} and Kristjan Adojaan and Alfredo Vizzini and Ave Suija and Donald Pfister and Baral, \{Hans Otto\} and Helle J{\"a}rv and Hugo Madrid and Jenni Nord{\'e}n and Liu, \{Jian Kui\} and Julia Pawlowska and Kadri P{\~o}ldmaa and Kadri P{\"a}rtel and Kadri Runnel and Karen Hansen and Larsson, \{Karl Henrik\} and Hyde, \{Kevin David\} and Marcelo Sandoval-Denis and Smith, \{Matthew E.\} and Merje Toome-Heller and Wijayawardene, \{Nalin N.\} and Nelson Menolli and Reynolds, \{Nicole K.\} and Rein Drenkhan and Maharachchikumbura, \{Sajeewa S.N.\} and Gibertoni, \{Tatiana B.\} and Thomas L{\ae}ss{\o}e and William Davis and Yuri Tokarev and Adriana Corrales and Soares, \{Adriene Mayra\} and Ahto Agan and Machado, \{Alexandre Reis\} and Andr{\'e}s Arg{\"u}elles-Moyao and Andrew Detheridge and \{de Meiras-Ottoni\}, Angelina and Annemieke Verbeken and Dutta, \{Arun Kumar\} and Cui, \{Bao Kai\} and Pradeep, \{C. K.\} and C{\'e}sar Mar{\'i}n and Daniel Stanton and Daniyal Gohar and Wanasinghe, \{Dhanushka N.\} and Eveli Otsing and Farzad Aslani and Griffith, \{Gareth W.\} and Lumbsch, \{Thorsten H.\} and Grossart, \{Hans Peter\} and Hossein Masigol and Ina Timling and Inga Hiiesalu and Jane Oja and Kupagme, \{John Y.\} and J{\'o}zsef Geml and Julieta Alvarez-Manjarrez and Kai Ilves and Kaire Loit and Kalev Adamson and Kazuhide Nara and Kati K{\"u}ngas and Keilor Rojas-Jimenez and Kri{\v s}s Bitenieks and Laszlo Irinyi and Nagy, \{L{\'a}szl{\'o} Laszlo\} and Liina Soonvald and Zhou, \{Li Wei\} and Lysett Wagner and Aime, \{M. Catherine\} and Maarja {\"O}pik and Mujica, \{Mar{\'i}a Isabel\} and Martin Metsoja and Martin Ryberg and Martti Vasar and Masao Murata and Nelsen, \{Matthew P.\} and Michelle Cleary and Samarakoon, \{Milan C.\} and Mingkwan Doilom and Mohammad Bahram and Niloufar Hagh-Doust and Olesya Dulya and Peter Johnston and Petr Kohout and Qian Chen and Qing Tian and Rajasree Nandi and Rasekh Amiri and Perera, \{Rekhani Hansika\} and \{dos Santos Chikowski\}, Renata and Mendes-Alvarenga, \{Renato L.\} and Roberto Garibay-Orijel and Robin Gielen and Rungtiwa Phookamsak and Jayawardena, \{Ruvishika S.\} and Saleh Rahimlou and Karunarathna, \{Samantha C.\} and Saowaluck Tibpromma and Brown, \{Shawn P.\} and Sepp, \{Siim Kaarel\} and Sunil Mundra and Luo, \{Zhu Hua\} and Tanay Bose and Tanel Vahter and Tarquin Netherway and Teng Yang and Tom May and Torda Varga and Wei Li and Coimbra, \{Victor Rafael Matos\} and \{de Oliveira\}, \{Virton Rodrigo Targino\} and \{de Lima\}, \{Vitor Xavier\} and Mikryukov, \{Vladimir S.\} and Yongzhong Lu and Yosuke Matsuda and Yumiko Miyamoto and Urmas K{\~o}ljalg and Leho Tedersoo",

note = " Publisher Copyright: {\textcopyright} 2021, MUSHROOM RESEARCH FOUNDATION.",

year = "2021",

month = jan,

day = "19",

doi = "10.1007/s13225-020-00466-2",

language = "English",

volume = "105",

pages = "1--16",

journal = "Fungal Diversity",

issn = "1560-2745",

publisher = "Springer Nature",

number = "1",

}

Põlme, S, Abarenkov, K, Henrik Nilsson, R, Lindahl, BD, Clemmensen, KE, Kauserud, H, Nguyen, N, Kjøller, R, Bates, ST, Baldrian, P, Frøslev, TG, Adojaan, K, Vizzini, A, Suija, A, Pfister, D, Baral, HO, Järv, H, Madrid, H, Nordén, J, Liu, JK, Pawlowska, J, Põldmaa, K, Pärtel, K, Runnel, K, Hansen, K, Larsson, KH, Hyde, KD, Sandoval-Denis, M, Smith, ME, Toome-Heller, M, Wijayawardene, NN, Menolli, N, Reynolds, NK, Drenkhan, R, Maharachchikumbura, SSN, Gibertoni, TB, Læssøe, T, Davis, W, Tokarev, Y, Corrales, A, Soares, AM, Agan, A, Machado, AR, Argüelles-Moyao, A, Detheridge, A, de Meiras-Ottoni, A, Verbeken, A, Dutta, AK, Cui, BK, Pradeep, CK, Marín, C, Stanton, D, Gohar, D, Wanasinghe, DN, Otsing, E, Aslani, F, Griffith, GW, Lumbsch, TH, Grossart, HP, Masigol, H, Timling, I, Hiiesalu, I, Oja, J, Kupagme, JY, Geml, J, Alvarez-Manjarrez, J, Ilves, K, Loit, K, Adamson, K, Nara, K, Küngas, K, Rojas-Jimenez, K, Bitenieks, K, Irinyi, L, Nagy, LL, Soonvald, L, Zhou, LW, Wagner, L, Aime, MC, Öpik, M, Mujica, MI, Metsoja, M, Ryberg, M, Vasar, M, Murata, M, Nelsen, MP, Cleary, M, Samarakoon, MC, Doilom, M, Bahram, M, Hagh-Doust, N, Dulya, O, Johnston, P, Kohout, P, Chen, Q, Tian, Q, Nandi, R, Amiri, R, Perera, RH, dos Santos Chikowski, R, Mendes-Alvarenga, RL, Garibay-Orijel, R, Gielen, R, Phookamsak, R, Jayawardena, RS, Rahimlou, S, Karunarathna, SC, Tibpromma, S, Brown, SP, Sepp, SK, Mundra, S, Luo, ZH, Bose, T, Vahter, T, Netherway, T, Yang, T, May, T, Varga, T, Li, W, Coimbra, VRM, de Oliveira, VRT, de Lima, VX, Mikryukov, VS, Lu, Y, Matsuda, Y, Miyamoto, Y, Kõljalg, U & Tedersoo, L 2021, 'FungalTraits: A user-friendly traits database of fungi and fungus-like stramenopiles', Fungal Diversity, cyfrol. 105, rhif 1, tt. 1-16. https://doi.org/10.1007/s13225-020-00466-2

TY - JOUR

T1 - FungalTraits

T2 - A user-friendly traits database of fungi and fungus-like stramenopiles

AU - Põlme, Sergei

AU - Abarenkov, Kessy

AU - Henrik Nilsson, R.

AU - Lindahl, Björn D.

AU - Clemmensen, Karina Engelbrecht

AU - Kauserud, Havard

AU - Nguyen, Nhu

AU - Kjøller, Rasmus

AU - Bates, Scott T.

AU - Baldrian, Petr

AU - Frøslev, Tobias Guldberg

AU - Adojaan, Kristjan

AU - Vizzini, Alfredo

AU - Suija, Ave

AU - Pfister, Donald

AU - Baral, Hans Otto

AU - Järv, Helle

AU - Madrid, Hugo

AU - Nordén, Jenni

AU - Liu, Jian Kui

AU - Pawlowska, Julia

AU - Põldmaa, Kadri

AU - Pärtel, Kadri

AU - Runnel, Kadri

AU - Hansen, Karen

AU - Larsson, Karl Henrik

AU - Hyde, Kevin David

AU - Sandoval-Denis, Marcelo

AU - Smith, Matthew E.

AU - Toome-Heller, Merje

AU - Wijayawardene, Nalin N.

AU - Menolli, Nelson

AU - Reynolds, Nicole K.

AU - Drenkhan, Rein

AU - Maharachchikumbura, Sajeewa S.N.

AU - Gibertoni, Tatiana B.

AU - Læssøe, Thomas

AU - Davis, William

AU - Tokarev, Yuri

AU - Corrales, Adriana

AU - Soares, Adriene Mayra

AU - Agan, Ahto

AU - Machado, Alexandre Reis

AU - Argüelles-Moyao, Andrés

AU - Detheridge, Andrew

AU - de Meiras-Ottoni, Angelina

AU - Verbeken, Annemieke

AU - Dutta, Arun Kumar

AU - Cui, Bao Kai

AU - Pradeep, C. K.

AU - Marín, César

AU - Stanton, Daniel

AU - Gohar, Daniyal

AU - Wanasinghe, Dhanushka N.

AU - Otsing, Eveli

AU - Aslani, Farzad

AU - Griffith, Gareth W.

AU - Lumbsch, Thorsten H.

AU - Grossart, Hans Peter

AU - Masigol, Hossein

AU - Timling, Ina

AU - Hiiesalu, Inga

AU - Oja, Jane

AU - Kupagme, John Y.

AU - Geml, József

AU - Alvarez-Manjarrez, Julieta

AU - Ilves, Kai

AU - Loit, Kaire

AU - Adamson, Kalev

AU - Nara, Kazuhide

AU - Küngas, Kati

AU - Rojas-Jimenez, Keilor

AU - Bitenieks, Krišs

AU - Irinyi, Laszlo

AU - Nagy, László Laszlo

AU - Soonvald, Liina

AU - Zhou, Li Wei

AU - Wagner, Lysett

AU - Aime, M. Catherine

AU - Öpik, Maarja

AU - Mujica, María Isabel

AU - Metsoja, Martin

AU - Ryberg, Martin

AU - Vasar, Martti

AU - Murata, Masao

AU - Nelsen, Matthew P.

AU - Cleary, Michelle

AU - Samarakoon, Milan C.

AU - Doilom, Mingkwan

AU - Bahram, Mohammad

AU - Hagh-Doust, Niloufar

AU - Dulya, Olesya

AU - Johnston, Peter

AU - Kohout, Petr

AU - Chen, Qian

AU - Tian, Qing

AU - Nandi, Rajasree

AU - Amiri, Rasekh

AU - Perera, Rekhani Hansika

AU - dos Santos Chikowski, Renata

AU - Mendes-Alvarenga, Renato L.

AU - Garibay-Orijel, Roberto

AU - Gielen, Robin

AU - Phookamsak, Rungtiwa

AU - Jayawardena, Ruvishika S.

AU - Rahimlou, Saleh

AU - Karunarathna, Samantha C.

AU - Tibpromma, Saowaluck

AU - Brown, Shawn P.

AU - Sepp, Siim Kaarel

AU - Mundra, Sunil

AU - Luo, Zhu Hua

AU - Bose, Tanay

AU - Vahter, Tanel

AU - Netherway, Tarquin

AU - Yang, Teng

AU - May, Tom

AU - Varga, Torda

AU - Li, Wei

AU - Coimbra, Victor Rafael Matos

AU - de Oliveira, Virton Rodrigo Targino

AU - de Lima, Vitor Xavier

AU - Mikryukov, Vladimir S.

AU - Lu, Yongzhong

AU - Matsuda, Yosuke

AU - Miyamoto, Yumiko

AU - Kõljalg, Urmas

AU - Tedersoo, Leho

PY - 2021/1/19

Y1 - 2021/1/19

N2 - The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies. Over the past decades, rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats. Yet, in spite of the progress of molecular methods, knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging. In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels. Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge, we reannotated 10,210 and 151 fungal and Stramenopila genera, respectively. This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera, designed for rapid functional assignments of environmental studies. In order to assign the trait states to fungal species hypotheses, the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences. On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1% dissimilarity threshold.

AB - The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies. Over the past decades, rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats. Yet, in spite of the progress of molecular methods, knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging. In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels. Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge, we reannotated 10,210 and 151 fungal and Stramenopila genera, respectively. This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera, designed for rapid functional assignments of environmental studies. In order to assign the trait states to fungal species hypotheses, the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences. On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1% dissimilarity threshold.

KW - Bioinformatics

KW - Community ecology

KW - Function

KW - Fungal traits

KW - Guild

KW - High-throughput sequencing

KW - Trophic modes

UR - https://www.scopus.com/pages/publications/85099911596

U2 - 10.1007/s13225-020-00466-2

DO - 10.1007/s13225-020-00466-2

M3 - Article

AN - SCOPUS:85099911596

SN - 1560-2745

VL - 105

SP - 1

EP - 16

JO - Fungal Diversity

JF - Fungal Diversity

IS - 1

ER -

FungalTraits: A user-friendly traits database of fungi and fungus-like stramenopiles

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