Research output per year
Research output per year
Equipments Details
Description
Genome sequencer for high throughput applications such as small and large whole genome sequencing, exome sequencing, targeted sequencing, whole transcriptome, mRNA-seq, and shotgun metagenomics.
160 Gb of data per day, and total of 1 Tb per run. Run time of 7 to 60 hours.
Uses sequencing by synthesis.
Process up to 8 human genomes at 30x coverage, each genome taking 27 hours.
Up to 2 simultaneous flow cells.
On-board instrument control computer, can also be accessed using wired in computer or over the internet.
160 Gb of data per day, and total of 1 Tb per run. Run time of 7 to 60 hours.
Uses sequencing by synthesis.
Process up to 8 human genomes at 30x coverage, each genome taking 27 hours.
Up to 2 simultaneous flow cells.
On-board instrument control computer, can also be accessed using wired in computer or over the internet.
Details
| Name | Genome sequencer [HiSeq 2500] |
|---|---|
| Acquisition date | 01 Jun 2013 |
| Manufacturers | Illumina (Singapore) |
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Research output
- 17 Article
-
Corallococcus senghenyddensis sp. nov., a myxobacterium with potent antimicrobial activity
Arakal, B. S., Rowlands, R. S., McCarthy, M., Whitworth, D. E., Maddocks, S. E., James, P. E. & Livingstone, P. G., 01 May 2024, In: Journal of Applied Microbiology. 135, 5, 11 p., lxae102.Research output: Contribution to journal › Article › peer-review
Open AccessFile45 Downloads (Pure) -
Microbial dynamics in soils of the Damma glacier forefield show succession in the functional genetic potential
Feng, M., Varliero, G., Qi, W., Stierli, B., Edwards, A., Robinson, S., van der Heijden, M. G. A. & Frey, B., 31 Dec 2023, In: Environmental Microbiology. 25, 12, p. 3116-3138 23 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile19 Citations (Scopus)32 Downloads (Pure) -
Defining key metabolic roles in osmotic adjustment and ROS homeostasis in the recretohalophyte Karelinia caspia under salt stress
Guo, Q., Han, J., Li, C., Hou, X., Zhao, C., Wang, Q., Wu, J. & Mur, L., 14 Mar 2022, In: Physiologia Plantarum. 174, 2, 16 p., e13663.Research output: Contribution to journal › Article › peer-review
Open AccessFile31 Citations (Scopus)295 Downloads (Pure) -
Microbiome-derived antimicrobial peptides offer therapeutic solutions for the treatment of Pseudomonas aeruginosa infections
Mulkern, A., Oyama, L., Cookson, A., Creevey, C., Wilkinson, T., Olleik, H., Maresca, M., da Silva, G., Fontes, P., Bazzolli, D., Mantovani, H., Damaris, B., Mur, L. & Huws, S., 01 Dec 2022, In: npj Biofilms and Microbiomes. 8, 1, 15 p., 70.Research output: Contribution to journal › Article › peer-review
Open AccessFile32 Citations (Scopus)105 Downloads (Pure) -
Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches
Huws, S. A., Edwards, J. E., Lin, W., Rubino, F., Alston, M., Swarbreck, D., Caim, S., Stevens, P. R., Pachebat, J., Won, M. Y., Oyama, L. B., Creevey, C. J. & Kingston-Smith, A. H., 01 Dec 2021, In: Microbiome. 9, 1, 17 p., 143.Research output: Contribution to journal › Article › peer-review
Open AccessFile31 Citations (SciVal)266 Downloads (Pure) -
The rumen eukaryotome is a source of novel antimicrobial peptides with therapeutic potential
Onime, L. A., Oyama, L. B., Thomas, B. J., Gani, J., Alexander, P., Waddams, K. E., Cookson, A., Fernandez-Fuentes, N., Creevey, C. J. & Huws, S. A., 08 Apr 2021, In: BMC Microbiology. 21, 1, 13 p., 105.Research output: Contribution to journal › Article › peer-review
Open AccessFile15 Citations (Scopus)215 Downloads (Pure) -
Rumen Protozoa Play a Significant Role in Fungal Predation and Plant Carbohydrate Breakdown
Williams, C., Thomas, B., McEwan, N., Rees Stevens, P., Creevey, C. & Huws, S., 29 Apr 2020, In: Frontiers in Microbiology. 11, 14 p., 720.Research output: Contribution to journal › Article › peer-review
Open AccessFile58 Citations (SciVal)256 Downloads (Pure) -
Inadvertent paralog inclusion drives artifactual topologies and timetree estimates in phylogenomics
Siu Ting, K., Torres-Sánchez, M., San Mauro, D., Wilcockson, D., Wilkinson, M., Pisani, D., O'Connell, M. J. & Creevey, C., 01 Jun 2019, In: Molecular Biology and Evolution. 36, 6, p. 1344-1356 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile60 Citations (Scopus)402 Downloads (Pure) -
Variation in Soil Fungal Composition Associated with the Invasion of Stellera chamaejasme L. in Qinghai–Tibet Plateau Grassland
He, W., Detheridge, A., Liu, Y., Wang, L., Wei, H., Griffith, G., Scullion, J. & Wei, Y., 20 Nov 2019, In: Microorganisms. 7, 12, 587.Research output: Contribution to journal › Article › peer-review
Open AccessFile27 Citations (Scopus)179 Downloads (Pure) -
Genome Sequencing and Pan-Genome Analysis of 23 Corallococcus spp. Strains Reveal Unexpected Diversity, With Particular Plasticity of Predatory Gene Sets
Livingstone, P., Morphew, R. & Whitworth, D., 19 Dec 2018, In: Frontiers in Microbiology. 9, 3187.Research output: Contribution to journal › Article › peer-review
Open AccessFile67 Citations (Scopus)307 Downloads (Pure) -
Identification of Stipules reduced, a leaf morphology gene in pea (Pisum sativum)
Moreau, C., Hofer, J. M., Eléouët, M., Sinjushin, A., Ambrose, M., Skøt, K., Blackmore, T., Swain, M., Hegarty, M., Balanza, V., Ferrándiz, C. & Ellis, T. H. N., 01 Oct 2018, In: New Phytologist. 220, 1, p. 288-299 12 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile34 Citations (SciVal)286 Downloads (Pure)