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1983 …2024

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Jackie is a Sêr Cymru II Fellow working on big data stringology algorithms for bioinformatics sequencing.

Her research journey started with combinatorics of partially ordered sets which led to stringology algorithmics and topics in artificial intelligence. She’s been intrigued by lexicographic Lyndon words and the Burrows-Wheeler transform and has investigated variants derived from integrating these structures with different ordering and search methods.

The current focus is on applying this expertise to bioinformatics alignment and compression algorithms. The application of these techniques to infectious diseases is of particular interest.

Jackie’s teaching experience spans the USA, UK and Africa which was combined with career breaks for raising a family.

She is a member of The Institute of Mathematics and its Applications and the Women's Engineering Society, and participates in various research communities: StringMasters, AlgoUK, and the Centre for Combinatorics on Words and Applications.

Expertise related to UN Sustainable Development Goals

In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):

  • SDG 3 - Good Health and Well-being

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Collaborations and top research areas from the last five years

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  • V-Words, Lyndon Words and Substring circ-UMFFs

    Daykin, J. W., Mhaskar, N. & Smyth, W. F., 2024, Combinatorial Optimization and Applications - 16th International Conference, COCOA 2023, Proceedings. Wu, W. & Guo, J. (eds.). Springer Nature, p. 471-484 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14461 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference Proceeding (Non-Journal item)

  • Local Maximal Equality-Free Periodicities

    Alzamel, M., Daykin, J. W., Hampson, C., Iliopoulos, C. S., Lim, Z. & Smyth, W. F., 2023, Artificial Intelligence Applications and Innovations. AIAI 2023 IFIP WG 12.5 International Workshops - MHDW 2023, 5G-PINE 2023, ΑΙBMG 2023, and VAA-CP-EB 2023, Proceedings. Maglogiannis, I., Iliadis, L., Papaleonidas, A. & Chochliouros, I. (eds.). Springer Nature, p. 359-368 10 p. (IFIP Advances in Information and Communication Technology; vol. 677).

    Research output: Chapter in Book/Report/Conference proceedingConference Proceeding (Non-Journal item)

  • Computation of the suffix array, burrows-wheeler transform and FM-index in V-order

    Daykin, J., Mhaskar, N. & Smyth, W. F., 03 Aug 2021, In: Theoretical Computer Science. 880, p. 82-96 15 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    3 Citations (SciVal)
    38 Downloads (Pure)
  • Concepts for Computing Patterns in 15th Century Korean Music

    Moon, S., Daykin, J. & Pu, I., 24 Oct 2020, PATTERNS 2020: The Twelfth International Conference on Pervasive Patterns and Applications. International Academy, Research, and Industry Association (IARIA), p. 6-11

    Research output: Chapter in Book/Report/Conference proceedingConference Proceeding (Non-Journal item)

  • Evaluation of a Permutation-Based Evolutionary Framework for Lyndon Factorizations

    Major, L., Clare, A., Daykin, J., Mora, B., Peña Gamboa, L. & Zarges, C., 31 Aug 2020, Parallel Problem Solving from Nature – PPSN XVI - 16th International Conference, PPSN 2020, Proceedings: 16th International Conference, Leiden, The Netherlands, September 5-9, 2020, Proceedings. Bäck, T., Preuss, M., Deutz, A., Emmerich, M., Wang, H., Doerr, C. & Trautmann, H. (eds.). Springer Nature, p. 390-403 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12269 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference Proceeding (Non-Journal item)

    Open Access
    File
    2 Citations (SciVal)
    142 Downloads (Pure)
  • On Arithmetically Progressed Suffix Arrays

    Daykin, J., Köppl, D., Kübel, D. & Stober, F., 29 Jun 2020, (Accepted/In press) Stringology.

    Research output: Chapter in Book/Report/Conference proceedingConference Proceeding (Non-Journal item)

  • PATTERNS 2020 The Twelfth International Conferences on Pervasive Patterns and Applications

    Daykin, J. (ed.), 24 Oct 2020, International Academy, Research, and Industry Association (IARIA). Mannaert, H., Pu, I. & Daykin, J. (eds.).

    Research output: Chapter in Book/Report/Conference proceedingConference Proceeding (Non-Journal item)

  • Applications of V-Order: Suffix Arrays, the Burrows-Wheeler Transform & the FM-index

    Alatabbi, A., Daykin, J. W., Mhaskar, N., Rahman, M. S. & Smyth, W. F., 16 Feb 2019, WALCOM: Algorithms and Computation - 13th International Conference, WALCOM 2019, Proceedings. Nakano, S., Mukhopadhyaya, K., Das, G. K. & Mandal, P. S. (eds.). Springer Nature, p. 329-338 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11355 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference Proceeding (Non-Journal item)

    1 Citation (SciVal)
  • Efficient pattern matching in degenerate strings with the Burrows–Wheeler transform

    Daykin, J., Groult, R., Guesnet, Y., Lecroq, T., Lefebvre, A., Léonard, M., Mouchard, L., Prieur-Gaston, É. & Watson, B., Jul 2019, In: Information Processing Letters. 147, p. 82-87 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    6 Citations (SciVal)
    97 Downloads (Pure)
  • Enhanced string factoring from alphabet orderings

    Clare, A. & Daykin, J. W., 01 Mar 2019, In: Information Processing Letters. 143, p. 4-7 4 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    5 Citations (SciVal)
    169 Downloads (Pure)
  • Evolutionary Search Techniques for the Lyndon Factorization of Biosequences

    Clare, A., Daykin, J., Mills, T. & Zarges, C., 13 Jul 2019, p. 1543-1550. 8 p.

    Research output: Contribution to conferencePaperpeer-review

    Open Access
    File
    5 Citations (SciVal)
    272 Downloads (Pure)