Research output per year
Research output per year
Personal profile
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
External positions
Member of Eukaryotic Division Committee, Microbiology Society
01 Sept 2012 → 30 Sept 2015
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- 1 Similar Profiles
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Profiles
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Kathryn Diane Mackinnon
Person: Doctor of Philosophy
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Angel Rumney
Person: Doctor of Philosophy
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Abigail Louisa Webb
Person: Doctor of Philosophy
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Investigating within-host population diversity of Cryptosporidium parvum using BlooMine
Morris, A. V., Connor, T., Pachebat, J. & Swain, M., 20 Nov 2025, In: BMC Genomics. 26, 1, 14 p., 1067.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches
Huws, S. A., Edwards, J. E., Lin, W., Rubino, F., Alston, M., Swarbreck, D., Caim, S., Stevens, P. R., Pachebat, J., Won, M. Y., Oyama, L. B., Creevey, C. J. & Kingston-Smith, A. H., 01 Dec 2021, In: Microbiome. 9, 1, 17 p., 143.Research output: Contribution to journal › Article › peer-review
Open AccessFile23 Citations (Scopus)201 Downloads (Pure) -
Generating Reliable Genome Assemblies of Intestinal Protozoans from Clinical Samples for the Purpose of Biomarker Discovery
Morris, A., Pachebat, J., Tyson, G., Robinson, G., Chalmers, R. & Swain, M., 2020, Biomedical Engineering Systems and Technologies - 12th International Joint Conference, BIOSTEC 2019, Revised Selected Papers. Roque, A., Gamboa, H., Tomczyk, A., De Maria, E., Putze, F., Moucek, R. & Fred, A. (eds.). Springer Nature, p. 216-241 26 p. (Communications in Computer and Information Science; vol. 1211 CCIS).Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (ISBN)
2 Citations (Scopus) -
The Isolation and Genome Sequencing of Five Novel Bacteriophages From the Rumen Active Against Butyrivibrio fibrisolvens
Friedersdorff, J. C. A., Kingston-Smith, A. H., Pachebat, J. A., Cookson, A. R., Rooke, D. & Creevey, C. J., 14 Jul 2020, In: Frontiers in Microbiology. 11, 13 p., 1588.Research output: Contribution to journal › Article › peer-review
Open AccessFile18 Citations (Scopus)157 Downloads (Pure) -
Domestication of Campylobacter jejuni NCTC 11168
Pascoe, B., Williams, L. K., Calland, J. K., Meric, G., Hitchings, M. D., Dyer, M., Ryder, J., Shaw, S., Lopes, B. S., Chintoan-Uta, C., Allan, E., Vidal, A., Fearnley, C., Everest, P., Pachebat, J. A., Cogan, T. A., Stevens, M. P., Humphrey, T. J., Wilkinson, T. S. & Cody, A. J. & 12 others, , 16 Jul 2019, In: Microbial genomics. 5, 7, 000279.Research output: Contribution to journal › Article › peer-review
Open AccessFile32 Citations (Scopus)170 Downloads (Pure) -
Evolutionary genomics of anthroponosis in Cryptosporidium
Nader, J., Mathers, T., Ward, B., Pachebat, J. A., Swain, M., Robinson, G., Chalmers, R. M., Hunter, P. R., van Oosterhout, C. & Tyler, K., 01 May 2019, In: Nature Microbiology. 4, 5, p. 826-836 11 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile103 Citations (Scopus)289 Downloads (Pure) -
Genomic analysis of bacteria in the Acute Oak Decline pathobiome
Doonan, J., Denman, S., Pachebat, J. A. & McDonald, J., 08 Jan 2019, In: Microbial genomics. 5, 1, 000240.Research output: Contribution to journal › Article › peer-review
Open AccessFile54 Citations (Scopus)209 Downloads (Pure) -
Identifying and Resolving Genome Misassembly Issues Important for Biomarker Discovery in the Protozoan Parasite, Cryptosporidium
Morris, A., Pachebat, J., Robinson, G., Chalmers, R. M. & Swain, M., 2019, Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies : Volume 3: BIOINFORMATICS. De Maria, E., Fred, A. & Gamboa, H. (eds.). Prague: Science and Technology Publications, Vol. 3. p. 90-100 11 p. (BIOINFORMATICS 2019 - 10th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 12th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2019).Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (ISBN)
Open Access4 Citations (Scopus) -
A pilot study using metagenomic sequencing of the sputum microbiome suggests potential bacterial biomarkers for lung cancer
Cameron, S., Lewis, K. E., Huws, S., Hegarty, M., Lewis, P. D., Pachebat, J. A. & Mur, L., 25 May 2017, In: PLoS ONE. 12, 5, 17 p., e0177062.Research output: Contribution to journal › Article › peer-review
Open AccessFile156 Citations (Scopus)295 Downloads (Pure) -
C 4 photosynthesis in the rice paddy: Insights from the Noxious Weed Echinochloa glabrescens
Covshoff, S., Szecowka, M., Hughes, T., Smith-Unna, R., Kelly, S., Bailey, K., Sage, T., Pachebat, J., Leegood, R. & Hibberd, J., 01 Jan 2016, In: Plant Physiology. 170, 1, p. 57-73 17 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile29 Citations (Scopus)253 Downloads (Pure) -
Draft Genome Sequence of Probiotic Enterococcus faecium Strain L-3
Karaseva, A., Tsapieva, A., Pachebat, J. A. & Suvorov, A., 28 Jan 2016, In: Genome Announcements. 4, 1, e01599-15.Research output: Contribution to journal › Article › peer-review
Open AccessFile10 Citations (Scopus)195 Downloads (Pure)
Datasets
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Evolutionary genomics of anthroponosis in Cryptosporidium
Swain, M., Pachebat, J. A., Robinson, G. & Chalmers, R. M., Prifysgol Aberystwyth | Aberystwyth University, 26 Sept 2018
DOI: 10.20391/8f137d06-4827-4829-ae7b-fac592d57942
Dataset
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Plant-attached microbiomes temporally transition into specialised ecological niches
Huws, S., Edwards, J. E., Lin, W., Rubino, F., Alston, M., Swarbreck, D., Caim, S., Rees Stevens, P., Pachebat, J., Won, M.-Y., Oyama, L. B., Creevey, C. & Kingston-Smith, A., Prifysgol Aberystwyth | Aberystwyth University, 03 Apr 2020
Dataset
Projects
- 6 Finished
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Development of a Dictyostelium discoideum based rapid drug screening system
Pachebat, J. (PI)
SSN Educational and Charitable Trust
01 Jul 2019 → 30 Jun 2020
Project: Externally funded research
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Understanding the impact of cryptosporidiosis in livestock farms in England and Wales
Pachebat, J. (PI)
19 May 2014 → 19 Nov 2014
Project: Externally funded research
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Characterisation and exploitation of bacterial endophytes in C4 energy crops
Farrar, K. (PI), Pachebat, J. (CoI), Donnison, I. (CoI), Huang, L. (CoI) & Adams, J. (CoI)
Biotechnology and Biological Sciences Research Council
01 Nov 2012 → 31 Oct 2016
Project: Externally funded research
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RSB : Rumen Systems Biology
Kingston-Smith, A. (PI), Swain, M. (CoI), Mur, L. (CoI), Creevey, C. (CoI), Allison, G. (CoI), Scollan, N. (CoI), Pachebat, J. (CoI), Newbold, J. (CoI), Morphew, R. (CoI), Griffith, G. (CoI) & Huws, S. (CoI)
Biotechnology and Biological Sciences Research Council
01 Apr 2012 → 31 Mar 2017
Project: Externally funded research
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Virus discovery in cases of undiagnosed gastroenteritis
Pachebat, J. (PI)
01 Feb 2011 → 30 Dec 2012
Project: Externally funded research
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Developing RAD markers as a resource for plant breeding
Hegarty, M. (PI), Pachebat, J. (CoI), Powell, W. (CoI) & Thorogood, D. (CoI)
Biotechnology and Biological Sciences Research Council
01 Sept 2010 → 29 Feb 2012
Project: Externally funded research
Activities
- 1 Conference
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British Society for Parasitology Spring Conference
Pachebat, J. A. (Organiser)
08 Apr 2018 → 11 Apr 2018Activity: Participating in or organising an event › Conference
Prizes
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Council Member of the British Society for Parasitology
Pachebat, J. (Recipient), 12 Apr 2016
Prize: Election to learned society
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Eukaryotic Microbiology Committee of the Society for General Microbiology
Pachebat, J. (Recipient), 2013
Prize: Election to learned society
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Honorary Treasurer of the British Society for Parasitology
Pachebat, J. (Recipient), 15 Apr 2019
Prize: Appointment
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UK Standards for Microbiology Investigations Steering Committee
Pachebat, J. (Recipient), 2016
Prize: Appointment