Personal profile
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Narcis Fernandez-Fuentes is a Reader in Genomics/Bioinformatics. He received his M.Sc. degree in Biotechnology from the Universitat Autonoma de Barcelona, Spain, in 2001, and his PhD in Computational Biology from the same university in 2004.
During his PhD he was Marie Curie Training Fellow at the Structural Genomic Group in EMBL-EBI, Hinxton; Cambridge, U.K. where he worked with Prof. Liisa Holm; from Oct. 2002 to Apr. 2003 he worked with Prof. Michael J.E. Sternberg, Imperial College of London, U.K., supported by an EMBO and a FEBS short term fellowships and finally, between Oct. 2003 and Mar. 2004 he was visiting fellow at Dr. Fiser's Lab., Albert Einstein College of Medicine, NY, supported by Boehringer Ingelheim Fonds.
From 2004 to 2007 he was Research Associate at Dr. Andras Fiser Laboratory at Albert Einstein College of Medicine. From 2007 to 2011 he was a Lecturer funded by the RCUK Academic Fellow scheme at the Leeds Institute of Molecular Medicine were he established the Computational Biology Group within the Experimental Therapeutics Section.
In January 2012 he joined Aberystwyth University as Reader in Genomics/Bioinformatics.
Research interests
Bioinformatics and Structural Bioinformatics. Protein design. Structure-based analysis of protein-protein interactions. Databases and bioinformatics tools. SNPs modelling.
Our research interests relate to a number of areas within Bioinformatics. We have a long-standing interest in protein structure prediction and structure-to-function relationship. We work in the study of biomolecular interactions, modeling of protein complexes in genome-wide interactomes, modulation of protein-protein interactions and structure-based protein design. We are also interested in computational design of peptides for the modulation of protein interactions as potential therapeutic agents or diagnostic tools. In the area of Plant Bioinformatics, we are developing bioinformatics-based approaches to complement guide and improve plant-breeding programmes and to understand the underlying biological mechanisms liked to the response to abiotic stresses. We are also interested in the modelling of genetic variation, e.g. SNPs, and the assessment of functional impact at protein level. Finally, we work in close collaboration with experimental labs in a synergistic manner by applying or developing novel tools to address different research questions.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 2 Zero Hunger
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SDG 3 Good Health and Well-being
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SDG 6 Clean Water and Sanitation
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SDG 12 Responsible Consumption and Production
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ModCRElib: A standalone package to model cis -regulatory elements
Gohl, P., Fornes, O., Bota, P. M., Meseguer, A., Bonet, J., Molina-Fernández, R., Planas-Iglesias, J., Hernandez, A. C., Gallego, O., Fernandez-Fuentes, N. & Oliva, B., 2026, bioRxiv.Research output: Working paper › Preprint
Open Access -
Oxidative Stress-Driven Transcriptomic Remodeling in Human Astrocytes Reveals Network Signatures Associated with Neurodegenerative and Cardiovascular Processes
Bota, P. M., Picón-Pagès, P., Fanlo-Ucar, H., Almabhouh, S., Bagudanch, O., Zeylan, M. E., Senyuz, S., Gohl, P., Molina-Fernández, R., Fernandez-Fuentes, N., Barbu, E., Vicente, R., Nattel, S., Ois, A., Puig-Pijoan, A., Garcia-Ojalvo, J., Keskin, O., Gursoy, A., Muñoz, F. J. & Oliva, B., 06 Jan 2026, (E-pub ahead of print) In: Computational and Structural Biotechnology Journal. 31, p. 263-275 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Downloads (Pure) -
Computational Design and Evaluation of Peptides to Target SARS-CoV-2 Spike-ACE2 Interaction
Almabhouh, S., Cecon, E., Basubas, F., Molina-Fernandez, R., Maciej Stepniewski, T., Selent, J., Jockers, R., Rahmeh, A., Oliva, B. & Fernandez-Fuentes, N., 14 Apr 2025, In: Molecules. 30, 8, 13 p., 1750.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)28 Downloads (Pure) -
Halotolerant bacterial endophyte Bacillus velezensis CBE mediates abiotic stress tolerance with minimal transcriptional modifications in Brachypodium distachyon
Abd El-Daim, I. A., Raynes, G., Fernandez-Fuentes, N., Hawkins, S., Cookson, A. & Farrar, K., 10 Jan 2025, In: Frontiers in Plant Science. 15, 16 p., 1485391.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)34 Downloads (Pure) -
Biochemical characterisation of a PL24 ulvan lyase from seaweed-associated Vibrio sp. FNV38
Rodrigues, V. J., Jouanneau, D., Fernandez-Fuentes, N., Onime, L. A., Huws, S. A., Odaneth, A. A. & Adams, J. M. M., 30 Apr 2024, In: Journal of Applied Phycology. 36, 2, p. 697-711 15 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)47 Downloads (Pure) -
Evolutionary analysis reveals the role of a non-catalytic domain of peptidyl arginine deiminase 2 in transcriptional regulation
Villanueva-Cañas, J. L., Fernandez-Fuentes, N., Saul, D., Kosinsky, R. L., Teyssier, C., Rogalska, M. E., Pérez, F. P., Oliva, B., Notredame, C., Beato, M. & Sharma, P., 19 Apr 2024, In: iScience. 27, 4, 21 p., 109584.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)31 Downloads (Pure) -
Structure-based learning to predict and model protein-DNA interactions and transcription-factor co-operativity in cis-regulatory elements
Fornes, O., Meseguer, A., Aguirre-Plans, J., Gohl, P., Bota, P. M., Molina Fernández, R., Bonet, J., Chinchilla Hernandez, A., Pegenaute, F., Gallego, O., Fernandez Fuentes, N. & Olivia, B., 12 Jun 2024, In: NAR Genomics and Bioinformatics. 6, 2, 19 p., lqae068.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)62 Downloads (Pure) -
CM2D3: Furnishing the Human Interactome with Structural Models of Protein Complexes Derived by Comparative Modeling and Docking
Mirela Bota, P., Hernandez, A. C., Segura, J., Gallego, O., Oliva, B. & Fernandez-Fuentes, N., 15 Jul 2023, In: Journal of Molecular Biology. 435, 14, 7 p., 168055.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)133 Downloads (Pure) -
SBILib: a handle for protein modeling and engineering
Gohl, P., Bonet, J., Fornes, O., Planas-Iglesias, J., Fernandez-Fuentes, N. & Oliva, B., 05 Oct 2023, In: Bioinformatics. 39, 10, 3 p., btad613.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)10 Downloads (Pure) -
Theoretical 3D Modeling of NLRP3 Inflammasome Complex
Bota, P. M., Oliva, B. & Fernandez-Fuentes, N., 15 Aug 2023, In: Methods in molecular biology (Clifton, N.J.). 2696, p. 269-280 12 p.Research output: Contribution to journal › Article › peer-review
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In silico characterisation of the complete Ly6 protein family in Fasciola gigantica supported through transcriptomics of the newly-excysted juveniles
Davey, S. D., Chalmers, I. W., Fernandez-Fuentes, N., Swain, M. T., Smith, D., Abbas Abidi, S. M., Saifullah, M. K., Raman, M., Ravikumar, G., McVeigh, P., Maule, A. G., Brophy, P. M. & Morphew, R. M., 17 Jan 2022, In: Molecular Omics. 18, 1, p. 45-56 12 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile8 Citations (Scopus)104 Downloads (Pure)
Datasets
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Dynamics of Miscanthus spp. overwinter leaf litter drop and decomposition – phenotypic and chemotypic analysis
Fernandez Fuentes, N. & Farrar, K., Prifysgol Aberystwyth | Aberystwyth University, 22 Oct 2025
DOI: 10.20391/b708ba8a-2cd0-4f32-bf99-c1a4d3ac56aa
Dataset
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Dynamics of Miscanthus spp. overwinter leaf litter drop and decomposition – microbiome analysis
Fernandez Fuentes, N. & Farrar, K., Prifysgol Aberystwyth | Aberystwyth University, 22 Oct 2025
DOI: 10.20391/dcef65f4-944b-4a53-b44e-5c3c1f242c20
Dataset
File
Projects
- 10 Finished
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Ser Cymru : Modelling and testing peptides to disrupt ACE2 <>S1 in SARS CoV-2
Fernandez Fuentes, N. (Project Lead)
Llywodraeth Cymru | Welsh Government
21 Oct 2020 → 31 Mar 2021
Project: Externally funded research
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Bioreview
Bryant, D. (Project Lead), Charlton, A. (Researcher Co‑Lead), Elias, R. (Researcher Co‑Lead), Fernandez Fuentes, N. (Researcher Co‑Lead), Gallagher, J. (Researcher Co‑Lead), Ravella, S. R. (Researcher Co‑Lead) & Winters, A. (Researcher Co‑Lead)
Biotechnology and Biological Sciences Research Council
01 Sept 2018 → 28 Feb 2022
Project: Externally funded research
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Targetting Switch I-II region in RAS using peptides
Fernandez Fuentes, N. (Project Lead)
01 Sept 2017 → 31 Aug 2018
Project: Externally funded research
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BBSRC Core Strategic Programme in Resilient Crops: Grasslands Gogerddan
Armstead, I. (Project Lead), Donnison, I. (Researcher Co‑Lead), Jones, H. (Researcher Co‑Lead), Skot, L. (Researcher Co‑Lead), Fernandez Fuentes, N. (Researcher Co‑Lead), Phillips, D. (Project Lead), Kingston-Smith, A. (Researcher Co‑Lead) & Bosch, M. (Researcher Co‑Lead)
Biotechnology and Biological Sciences Research Council
01 Apr 2017 → 31 Mar 2020
Project: Externally funded research
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ERA-IB5 14-071 OXYPOL Optimised laccase systems for high-value bio-plastics from biomass
Gallagher, J. (Project Lead), Bryant, D. (Researcher Co‑Lead), Fernandez Fuentes, N. (Researcher Co‑Lead), Hodgson, E. (Researcher Co‑Lead) & Winters, A. (Researcher Co‑Lead)
Biotechnology and Biological Sciences Research Council
01 Jun 2015 → 31 Aug 2018
Project: Externally funded research
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BBSRC Embrapa: Using computational novel methods to characterise the genetics of tan spot resistance in wheat
Fernandez Fuentes, N. (Project Lead), Camargo-Rodriguez, A. (Project Lead), Doonan, J. (Researcher Co‑Lead) & Draper, J. (Researcher Co‑Lead)
Centro Universitário Newton Paiva
01 Apr 2015 → 31 Mar 2016
Project: Externally funded research
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Can cyclin dependant kinase activity be manipulated to control chromosome pairing and recombination in plants?
Doonan, J. (Project Lead), Jenkins, G. (Researcher Co‑Lead) & Fernandez Fuentes, N. (Researcher Co‑Lead)
Biotechnology and Biological Sciences Research Council
01 Jan 2015 → 31 Aug 2018
Project: Externally funded research
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Development of training material and software hardening-BBSRC BIS Big Data Capital
Fernandez Fuentes, N. (Project Lead)
Biotechnology and Biological Sciences Research Council
01 Sept 2014 → 02 Feb 2016
Project: Externally funded research
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Enzyme design using High Performance Computing
Fernandez Fuentes, N. (Project Lead)
01 Sept 2012 → 31 Aug 2015
Project: Externally funded research
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Bioinformatics and genomic and phenomic platform development
Armstead, I. (Project Lead), Swain, M. (Researcher Co‑Lead), Doonan, J. (Researcher Co‑Lead), Boyle, R. (Researcher Co‑Lead), Hegarty, M. (Researcher Co‑Lead), Thomas, I. (Researcher Co‑Lead), Huang, L. (Researcher Co‑Lead), Fernandez Fuentes, N. (Researcher Co‑Lead), Neal, M. (Researcher Co‑Lead) & Gay, A. (Researcher Co‑Lead)
01 Apr 2012 → 31 Mar 2017
Project: Externally funded research