A China-UK joint phenomics consortium to dissect the basis of crop stress resistance in the face of climate change

Research output

Research output per year 2018 2021 2024

• 11 Article
• 2 Conference Proceeding (Non-Journal item)
• 1 Editorial
• 1 Review Article

Research output per year

Research output per year

Search results

• 2024

  MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis

  Wang, X., Liang, S., Yang, W., Yu, K., Liang, F., Zhao, B., Zhu, X., Zhou, C., Mur, L. A. J., Roberts, J. A., Zhang, J. & Zhang, X., 22 Nov 2024, In: Journal of Integrative Plant Biology. p. 2329 - 2345 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Metabolome 100%
  • Mass Spectrometry 100%
  1 Citation (Scopus)

  11 Downloads (Pure)
• 2022

  Crop phenotyping studies with application to crop monitoring

  Jin, X., Yang, W., Doonan, J. H. & Atzberger, C., 08 Oct 2022, In: Crop Journal. 10, 5, p. 1221-1223 3 p.

  Research output: Contribution to journal › Editorial › peer-review

  Open Access

  File
  9 Citations (Scopus)

  210 Downloads (Pure)

• The Kelch-F-box protein SMALL AND GLOSSY LEAVES 1 (SAGL1) negatively influences salicylic acid biosynthesis in Arabidopsis thaliana by promoting the turn-over of transcription factor SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1)

  Yu, K., Yang, W., Zhao, B., Wang, L., Zhang, P., Ouyang, Y., Chang, Y., Chen, G., Zhang, J., Wang, S., Wang, X., Wang, P., Wang, W., Roberts, J., Jiang, K., Mur, L. & Zhang, X., 30 Jun 2022, In: New Phytologist. 235, 3, p. 885-897 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Anabolism 100%
  • Systemic Acquired Resistance 83%
  • Arabidopsis thaliana 33%
  • Transcription Factor 33%
  • Regulatory Mechanism 16%
  18 Citations (Scopus)

  48 Downloads (Pure)
• 2021

  A deep learning-integrated micro-CT image analysis pipeline for quantifying rice lodging resistance-related traits

  Wu, D., Wu, D., Feng, H., Duan, L., Dai, G., Liu, X., Wang, K., Yang, P., Chen, G., Gay, A. P., Doonan, J. H., Niu, Z., Xiong, L. & Yang, W., 08 Mar 2021, In: Plant Communications. 2, 2, 100165.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Culms 100%
  • Lodging Resistance 35%
  • Pipelines 28%
  • Learning 21%
  • Image Analysis 21%
  39 Citations (Scopus)

  150 Downloads (Pure)

• Deep Segmentation of Point Clouds of Wheat

  Ghahremani, M., Williams, K., Corke, F. M. K., Tiddeman, B., Liu, Y. & Doonan, J. H., 24 Mar 2021, In: Frontiers in Plant Science. 12, 15 p., 608732.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Point Cloud 100%
  • Segmentation 80%
  • Links 60%
  • 3D Analysis 20%
  • Networks 20%
  30 Citations (Scopus)

  154 Downloads (Pure)

• Direct and accurate feature extraction from 3D point clouds of plants using RANSAC

  Ghahremani, M., Williams, K., Corke, F., Tiddeman, B., Liu, Y., Wang, X. & Doonan, J. H., 01 Aug 2021, In: Computers and Electronics in Agriculture. 187, 106240.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Point Cloud 100%
  • Plant 75%
  • Random Sample 37%
  • Datum 37%
  • Sample 37%
  39 Citations (Scopus)

  379 Downloads (Pure)

• FFD: Fast Feature Detector

  Ghahremani, M., Liu, Y. & Tiddeman, B., 2021, In: IEEE Transactions on Image Processing. 30, p. 1153-1168 16 p., 9292438.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Feature Detector 100%
  • Simulation Mode 75%
  • Computational Time 50%
  • Domains 50%
  • Experimental Result 25%
  26 Citations (Scopus)

  102 Downloads (Pure)

• Rethinking of the roles of endophyte symbiosis and mycotoxin in oxytropis plants

  Guan, H., Liu, X., Mur, L. A. J., Fu, Y., Wei, Y., Wang, J. & He, W., 20 May 2021, In: Journal of Fungi. 7, 5, 14 p., e400.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

  • Symbiosis 100%
  • Commensalism 100%
  • Plant 80%
  • Oxytropis 60%
  • Endophyte 60%
  14 Citations (Scopus)

  110 Downloads (Pure)

• The different root apex zones contribute to drought priming induced tolerance to a reoccurring drought stress in wheat

  Wang, X., Chen, J., Ge, J., Huang, M., Cai, J., Zhou, Q., Dai, T., Mur, L. A. J. & Jiang, D., 04 Oct 2021, In: Crop Journal. 9, 5, p. 1088-1097 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Stress 100%
  • Gene 75%
  • Drought Tolerance 50%
  • Plant 50%
  • Cell Cycle 50%
  16 Citations (Scopus)

  117 Downloads (Pure)
• 2020

  Image-Based Assessment of Drought Response in Grapevines

  Briglia, N., Williams, K., Wu, D., Li, Y., Tao, S., Corke, F., Montanaro, G., Petrozza, A., Amato, D., Cellini, F., Doonan, J. H., Yang, W. & Nuzzo, V., 15 May 2020, In: Frontiers in Plant Science. 11, 12 p., 595.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Drought 100%
  • Image 80%
  • Images 80%
  • Leaf Area 60%
  • Experiment 60%
  41 Citations (Scopus)

  180 Downloads (Pure)

• Orderly Disorder in Point Cloud Domain

  Ghahremani Boozandani, M., Tiddeman, B., Liu, Y. & Behera, A., 03 Nov 2020, Computer Vision: ECCV 2020. Vedaldi, A., Bischof, H., Brox, T. & Frahm, J.-M. (eds.). Springer Nature, p. 494-509 16 p. 1268. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12373 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (Non-Journal item)

  Open Access

  File

  • Networks 100%
  • Point Cloud 40%
  • Simulation Mode 40%
  • Links 40%
  • Network Performance 20%
  7 Citations (Scopus)

  89 Downloads (Pure)
• 2019

  A functional-structural model for alfalfa that accurately integrates shoot and root growth and development

  Zhang, W., Wang, G., Han, J., Li, F., Zhang, Q. & Doonan, J., 17 Jan 2019, Proceedings - 2018 6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, PMA 2018. IEEE Press, p. 134-140 7 p. 8611587. (Proceedings - 2018 6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, PMA 2018).

  Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (Non-Journal item)

  • Model 100%
  • Organ 66%
  • Biomass 50%
  • Shoot 50%
  • Growth and Development 50%
  2 Citations (Scopus)

• Combining high-throughput micro-CT-RGB phenotyping and genome-wide association study to dissect the genetic architecture of tiller growth in rice

  Wu, D., Guo, Z., Ye, J., Feng, H., Liu, J., Chen, G., Zheng, J., Yan, D., Yang, X., Xiong, X., Liu, Q., Niu, Z., Gay, A., Doonan, J., Xiong, L. & Yang, W., 07 Jan 2019, In: Journal of Experimental Botany. 70, 2, p. 545-561 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Micro-Computed Tomography 100%
  • Phenotype 100%
  • Growth 100%
  • Genetic Architecture 100%
  • Genome-Wide Association Study 100%
  65 Citations (Scopus)

  312 Downloads (Pure)
• 2018

  Novel digital features feature discriminate between drought resistant and drought sensitive rice under controlled and field conditions

  Duan, L., Han, J., Guo, Z., Tu, H., Yang, P., Zhang, D., Fan, Y., Chen, G., Xiong, L., Dai, M., Williams, K., Corke, F., Doonan, J. & Yang, W., 17 Apr 2018, In: Frontiers in Plant Science. 9, 492.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Drought 100%
  • Area 89%
  • Ratio 69%
  • Response 50%
  • Plant 50%
  46 Citations (Scopus)

  212 Downloads (Pure)

• Plant phenomics: history, present status and challenges

  Zhou, J., Tardieu, F., Pridmore, T., Doonan, J., Reynolds, D., Hall, N., Griffiths, S., Cheng, T., Zhu, Y., Wang, X., Jiang, D. & Ding, Y., 09 Jul 2018, In: Journal of Nanjing Agricultural University. 41, 4, p. 580-588 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Robotics 100%
  • Application 100%
  • Field Research 50%
  • Computer Vision 50%
  • Handheld Device 50%
  648 Downloads (Pure)