Assembling the genome organisation in birds: beyond "catalogues of genes"

  • Larkin, Denis Mikhailovich (PI)

Project: Externally funded research

Project Details

StatusFinished
Effective start/end date16 May 2013 → 15 May 2016

Funding

  • Biotechnology and Biological Sciences Research Council (Funder reference unknown): £280,393.00

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  • Fourth Report on Chicken Genes and Chromosomes 2022

    Smith, J., Alfieri, J. M., Anthony, N., Arensburger, P., Athrey, G. N., Balacco, J., Balic, A., Bardou, P., Barela, P., Bigot, Y., Blackmon, H., Borodin, P. M., Carroll, R., Casono, M. C., Charles, M., Cheng, H., Chiodi, M., Cigan, L., Coghill, L. M. & Crooijmans, R. & 104 others, Das, N., Davey, S., Davidian, A., Degalez, F., Dekkers, J. M., Derks, M., Diack, A. B., Djikeng, A., Drechsler, Y., Dyomin, A., Fedrigo, O., Fiddaman, S. R., Formenti, G., Frantz, L. A. F., Fulton, J. E., Gaginskaya, E., Galkina, S., Gallardo, R. A., Geibel, J., Gheyas, A. A., Godinez, C. J. P., Goodell, A., Graves, J. A. M., Griffin, D. K., Haase, B., Han, J.-L., Hanotte, O., Henderson, L. J., Hou, Z.-C., Howe, K., Huynh, L., Ilatsia, E., Jarvis, E. D., Johnson, S. M., Kaufman, J., Kelly, T., Kemp, S., Kern, C., Keroack, J. H., Klopp, C., Lagarrigue, S., Lamont, S. J., Lange, M., Lanke, A., Larkin, D. M., Larson, G., Layos, J. K. N., Lebrasseur, O., Malinovskaya, L. P., Martin, R. J., Martin Cerezo, M. L., Mason, A. S., McCarthy, F. M., McGrew, M. J., Mountcastle, J., Muhonja, C. K., Muir, W., Muret, K., Murphy, T. D., Ng’ang’a, I., Nishibori, M., O’Connor, R. E., Ogugo, M., Okimoto, R., Ouko, O., Patel, H. R., Perini, F., Pigozzi, M. I., Potter, K. C., Price, P. D., Reimer, C., Rice, E. S., Rocos, N., Rogers, T. F., Saelao, P., Schauer, J., Schnabel, R. D., Schneider, V. A., Simianer, H., Smith, A., Stevens, M. P., Stiers, K., Tiambo, C. K., Tixier-Boichard, M., Torgasheva, A. A., Tracey, A., Tregaskes, C. A., Vervelde, L., Wang, Y., Warren, W. C., Waters, P. D., Webb, D., Weigend, S., Wolc, A., Wright, A. E., Wright, D., Wu, Z., Yamagata, M., Yang, C., Yin, Z.-T., Young, M. C., Zhang, G., Zhao, B. & Zhou, H., 30 Jan 2023, In: Cytogenetic and Genome Research. 162, 8-9, p. 405-528

    Research output: Contribution to journal › Article › peer-review

    Open Access
    17 Citations (Scopus)

  • Patterns of microchromosome organization remain highly conserved throughout avian evolution

    O'Connor, R. E., Kiazim, L., Skinner, B., Fonseka, G., Joseph, S., Jennings, R., Larkin, D. M. & Griffin, D. K., 01 Mar 2019, In: Chromosoma. 128, 1, p. 21-29 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File
    57 Citations (Scopus)
    123 Downloads (Pure)

  • Chromosome-level assembly reveals extensive rearrangement in saker falcon and budgerigar, but not ostrich, genomes

    O'Connor, R. E., Farré, M., Joseph, S., Damas, J., Kiazim, L., Jennings, R., Bennett, S., Slack, E. A., Allanson, E., Larkin, D. M. & Griffin, D. K., 24 Oct 2018, In: Genome Biology. 19, 1, 171.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File
    49 Citations (Scopus)
    139 Downloads (Pure)

  • Construction of Red Fox Chromosomal Fragments from the Short-Read Genome Assembly

    Rando, H. M., Farré, M., Robson, M. P., Won, N. B., Johnson, J. L., Buch, R., Bastounes, E. R., Xiang, X., Feng, S., Liu, S., Xiong, Z., Kim, J., Zhang, G., Trut, L. N., Larkin, D. M. & Kukekova, A. V., 20 Jun 2018, In: Genes. 9, 6, 308.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File
    10 Citations (Scopus)
    137 Downloads (Pure)

  • Reconstruction of avian ancestral karyotypes reveals differences in the evolutionary history of macro- and microchromosomes

    Damas, J., Kim, J., Farré, M., Griffin, D. K. & Larkin, D. M., 05 Oct 2018, In: Genome Biology. 19, 1, 155.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File
    41 Citations (Scopus)
    149 Downloads (Pure)

  • Reconstruction of the diapsid ancestral genome permits chromosome evolution tracing in avian and non-avian dinosaurs

    O'Connor, R. E., Romanov, M. N., Kiazim, L. G., Barrett, P. M., Farré, M., Damas, J., Ferguson-Smith, M., Valenzuela, N., Larkin, D. M. & Griffin, D. K., 21 May 2018, In: Nature Communications. 9, 1883.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File
    55 Citations (Scopus)
    147 Downloads (Pure)

  • Upgrading short read animal genome assemblies to chromosome level using comparative genomics and a universal probe set

    Damas, J., O'Connor, R., Farré, M., Lenis, V., Martell, H., Mandawala, A., Fowler, K., Joseph, S., Swain, M., Griffin, D. & Larkin, D. M., 01 May 2017, In: Genome Research. 27, 5, p. 875-884 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File
    73 Citations (Scopus)
    172 Downloads (Pure)

  • Novel insights into chromosome evolution in birds, archosaurs, and reptiles

    Farré, M., Narayan, J., Slavov, G., Damas, J., Auvil, L., Li, C., Jarvis, E. D., Burt, D. W., Griffin, D. K. & Larkin, D. M., 25 Aug 2016, In: Genome Biology and Evolution. 8, 8, p. 2442-2451 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File
    53 Citations (Scopus)
    152 Downloads (Pure)