Assembling the genome organisation in birds: beyond "catalogues of genes"

  • Larkin, Denis Mikhailovich (PI)

Project: Externally funded research

Search results

  • 2023

    Fourth Report on Chicken Genes and Chromosomes 2022

    Smith, J., Alfieri, J. M., Anthony, N., Arensburger, P., Athrey, G. N., Balacco, J., Balic, A., Bardou, P., Barela, P., Bigot, Y., Blackmon, H., Borodin, P. M., Carroll, R., Casono, M. C., Charles, M., Cheng, H., Chiodi, M., Cigan, L., Coghill, L. M. & Crooijmans, R. & 104 others, Das, N., Davey, S., Davidian, A., Degalez, F., Dekkers, J. M., Derks, M., Diack, A. B., Djikeng, A., Drechsler, Y., Dyomin, A., Fedrigo, O., Fiddaman, S. R., Formenti, G., Frantz, L. A. F., Fulton, J. E., Gaginskaya, E., Galkina, S., Gallardo, R. A., Geibel, J., Gheyas, A. A., Godinez, C. J. P., Goodell, A., Graves, J. A. M., Griffin, D. K., Haase, B., Han, J.-L., Hanotte, O., Henderson, L. J., Hou, Z.-C., Howe, K., Huynh, L., Ilatsia, E., Jarvis, E. D., Johnson, S. M., Kaufman, J., Kelly, T., Kemp, S., Kern, C., Keroack, J. H., Klopp, C., Lagarrigue, S., Lamont, S. J., Lange, M., Lanke, A., Larkin, D. M., Larson, G., Layos, J. K. N., Lebrasseur, O., Malinovskaya, L. P., Martin, R. J., Martin Cerezo, M. L., Mason, A. S., McCarthy, F. M., McGrew, M. J., Mountcastle, J., Muhonja, C. K., Muir, W., Muret, K., Murphy, T. D., Ng’ang’a, I., Nishibori, M., O’Connor, R. E., Ogugo, M., Okimoto, R., Ouko, O., Patel, H. R., Perini, F., Pigozzi, M. I., Potter, K. C., Price, P. D., Reimer, C., Rice, E. S., Rocos, N., Rogers, T. F., Saelao, P., Schauer, J., Schnabel, R. D., Schneider, V. A., Simianer, H., Smith, A., Stevens, M. P., Stiers, K., Tiambo, C. K., Tixier-Boichard, M., Torgasheva, A. A., Tracey, A., Tregaskes, C. A., Vervelde, L., Wang, Y., Warren, W. C., Waters, P. D., Webb, D., Weigend, S., Wolc, A., Wright, A. E., Wright, D., Wu, Z., Yamagata, M., Yang, C., Yin, Z.-T., Young, M. C., Zhang, G., Zhao, B. & Zhou, H., 30 Jan 2023, In: Cytogenetic and Genome Research. 162, 8-9, p. 405-528

    Research output: Contribution to journal › Article › peer-review

    Open Access
    21 Citations (Scopus)
  • 2019

    Patterns of microchromosome organization remain highly conserved throughout avian evolution

    O'Connor, R. E., Kiazim, L., Skinner, B., Fonseka, G., Joseph, S., Jennings, R., Larkin, D. M. & Griffin, D. K., 01 Mar 2019, In: Chromosoma. 128, 1, p. 21-29 9 p.

    Research output: Contribution to journal › Article › peer-review

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    57 Citations (Scopus)
    123 Downloads (Pure)
  • 2018

    Chromosome-level assembly reveals extensive rearrangement in saker falcon and budgerigar, but not ostrich, genomes

    O'Connor, R. E., Farré, M., Joseph, S., Damas, J., Kiazim, L., Jennings, R., Bennett, S., Slack, E. A., Allanson, E., Larkin, D. M. & Griffin, D. K., 24 Oct 2018, In: Genome Biology. 19, 1, 171.

    Research output: Contribution to journal › Article › peer-review

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    49 Citations (Scopus)
    140 Downloads (Pure)

  • Chromosome Level Genome Assembly and Comparative Genomics between Three Falcon Species Reveals an Unusual Pattern of Genome Organisation

    Joseph, S., O’Connor, R., Al Mutery, A., Watson, M., Larkin, D. & Griffin, D., 18 Oct 2018, In: Diversity. 10, 4, 113.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    26 Citations (Scopus)

  • Construction of Red Fox Chromosomal Fragments from the Short-Read Genome Assembly

    Rando, H. M., Farré, M., Robson, M. P., Won, N. B., Johnson, J. L., Buch, R., Bastounes, E. R., Xiang, X., Feng, S., Liu, S., Xiong, Z., Kim, J., Zhang, G., Trut, L. N., Larkin, D. M. & Kukekova, A. V., 20 Jun 2018, In: Genes. 9, 6, 308.

    Research output: Contribution to journal › Article › peer-review

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    10 Citations (Scopus)
    142 Downloads (Pure)

  • Reconstruction of avian ancestral karyotypes reveals differences in the evolutionary history of macro- and microchromosomes

    Damas, J., Kim, J., Farré, M., Griffin, D. K. & Larkin, D. M., 05 Oct 2018, In: Genome Biology. 19, 1, 155.

    Research output: Contribution to journal › Article › peer-review

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    42 Citations (Scopus)
    149 Downloads (Pure)

  • Reconstruction of the diapsid ancestral genome permits chromosome evolution tracing in avian and non-avian dinosaurs

    O'Connor, R. E., Romanov, M. N., Kiazim, L. G., Barrett, P. M., Farré, M., Damas, J., Ferguson-Smith, M., Valenzuela, N., Larkin, D. M. & Griffin, D. K., 21 May 2018, In: Nature Communications. 9, 1883.

    Research output: Contribution to journal › Article › peer-review

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    56 Citations (Scopus)
    148 Downloads (Pure)
  • 2017

    Upgrading short read animal genome assemblies to chromosome level using comparative genomics and a universal probe set

    Damas, J., O'Connor, R., Farré, M., Lenis, V., Martell, H., Mandawala, A., Fowler, K., Joseph, S., Swain, M., Griffin, D. & Larkin, D. M., 01 May 2017, In: Genome Research. 27, 5, p. 875-884 10 p.

    Research output: Contribution to journal › Article › peer-review

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    74 Citations (Scopus)
    175 Downloads (Pure)
  • 2016

    Novel insights into chromosome evolution in birds, archosaurs, and reptiles

    Farré, M., Narayan, J., Slavov, G., Damas, J., Auvil, L., Li, C., Jarvis, E. D., Burt, D. W., Griffin, D. K. & Larkin, D. M., 25 Aug 2016, In: Genome Biology and Evolution. 8, 8, p. 2442-2451 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
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    53 Citations (Scopus)
    152 Downloads (Pure)