Research output per year
Research output per year
Project Details
Description
Technological and analytical advances in plant science are increasingly data intensive. While these offer new opportunities for understanding and developing precision plant breeding they also bring considerable challenges. One of these challenges is in developing an informatics infrastructure that can accommodate the various dataset-types generated by research from the molecule to the field and implement the necessary relational integration to mine these datasets. This work brings together process and research in order to deliver informatic-based, high-throughput and genome/phenome-scale analytical methodologies to inform both fundamental research into genome/phenome biology and germplasm improvement in the context of plant breeding.
| Status | Finished |
|---|---|
| Effective start/end date | 01 Apr 2012 → 31 Mar 2017 |
Funding
- Biotechnology and Biological Sciences Research Council: £2,290,933.00
UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This project contributes towards the following SDG(s):
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A deep learning-integrated micro-CT image analysis pipeline for quantifying rice lodging resistance-related traits
Wu, D., Wu, D., Feng, H., Duan, L., Dai, G., Liu, X., Wang, K., Yang, P., Chen, G., Gay, A. P., Doonan, J. H., Niu, Z., Xiong, L. & Yang, W., 08 Mar 2021, In: Plant Communications. 2, 2, 100165.Research output: Contribution to journal › Article › peer-review
Open AccessFile84 Downloads (Pure) -
Drought priming effects on alleviating the photosynthetic limitations of wheat cultivars (Triticum aestivum L.) with contrasting tolerance to abiotic stresses
Mendanha, T., Rosenqvist, E., Nordentoft Hyldgaard, B., Doonan, J. H. & Ottosen, C. O., 27 Nov 2020, In: Journal of Agronomy and Crop Science. 206, 6, p. 651-664 14 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile147 Downloads (Pure) -
Genotypic variations in leaf and whole-plant water use efficiencies are closely related in bread wheat genotypes under well-watered and water-limited conditions during grain filling
del Pozo, A., Méndez-Espinoza, A. M., Romero-Bravo, S., Garriga, M., Estrada, F., Alcaíno, M., Camargo-Rodriguez, A. V., Corke, F. M. K., Doonan, J. H. & Lobos, G. A., 16 Jan 2020, In: Scientific Reports. 10, 1, 460.Research output: Contribution to journal › Article › peer-review
Open AccessFile87 Downloads (Pure) -
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors
Gordon, S. P., Contreras-Moreira, B., Levy, J. J., Djamei, A., Czedik-Eysenberg, A., Tartaglio, V. S., Session, A., Martin, J., Cartwright, A., Katz, A., Singan, V. R., Goltsman, E., Barry, K., Dinh-Thi, V. H., Chalhoub, B., Diaz-Perez, A., Sancho, R., Lusinska, J., Wolny, E., Nibau, C., & 13 others, 29 Jul 2020, In: Nature Communications. 11, 1, 16 p., 3670.Research output: Contribution to journal › Article › peer-review
Open AccessFile141 Downloads (Pure) -
High-Throughput Genome-Wide Genotyping To Optimize the Use of Natural Genetic Resources in the Grassland Species Perennial Ryegrass (Lolium perenne L.)
Keep, T., Sampoux, J. P., Blanco-Pastor, J. L., Dehmer, K. J., Hegarty, M. J., Ledauphin, T., Litrico, I., Muylle, H., Roldán-Ruiz, I., Roschanski, A. M., Ruttink, T., Surault, F., Willner, E. & Barre, P., 01 Sept 2020, In: G3 (Bethesda, Md.). 10, 9, p. 3347-3364 18 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile80 Downloads (Pure) -
Semi-Automated Field Plot Segmentation From UAS Imagery for Experimental Agriculture
Robb, C., Hardy, A., Doonan, J. H. & Brook, J., 09 Dec 2020, In: Frontiers in Plant Science. 11, 13 p., 591886.Research output: Contribution to journal › Article › peer-review
Open AccessFile83 Downloads (Pure) -
A comparative assessment of the performance of a stay-green sorghum (Sorghum bicolor (L) Moench) introgression line developed by marker-assisted selection and its parental lines
Galyuon, I. K., Gay, A., Hash, C. T., Bidinger, F. R. & Howarth, C., 26 Jun 2019, In: African Journal of Biotechnology. 18, 26, p. 548-563 16 p., 7118D0361330.Research output: Contribution to journal › Article › peer-review
Open AccessFile185 Downloads (Pure) -
Differential gene expression and gene ontologies associated with increasing water-stress in leaf and root transcriptomes of perennial ryegrass (Lolium perenne)
Fradera-Sola, A., Thomas, A., Gasior, D., Harper, J., Hegarty, M., Armstead, I. & Fernandez Fuentes, N., 30 Jul 2019, In: PLoS One. 14, 7, e0220518.Research output: Contribution to journal › Article › peer-review
Open AccessFile142 Downloads (Pure) -
Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species
Maughan, P. J., Lee, R., Walstead, R., Vickerstaff, R. J., Fogarty, M. C., Brouwer, C. R., Reid, R. R., Jay, J. J., Bekele, W. A., Jackson, E. W., Tinker, N. A., Langdon, T., Schlueter, J. A. & Jellen, E. N., 22 Nov 2019, In: BMC Biology. 17, 1, 92.Research output: Contribution to journal › Article › peer-review
Open AccessFile39 Citations (SciVal)108 Downloads (Pure) -
Integrating a newly developed BAC-based physical mapping resource for Lolium perenne with a genome-wide association study across a L. Perenne European ecotype collection identifies genomic contexts associated with agriculturally important traits
Harper, J., de Vega, J., Swain, S., Heavens, D., Gasior, D., Thomas, A., Evans, C., Lovatt, A., Lister, S., Thorogood, D., Skot, L., Hegarty, M., Blackmore, T., Kudrna, D., Byrne, S., Asp, T., Powell, W., Fernandez-Fuentes, N. & Armstead, I., 08 May 2019, In: Annals of Botany. 123, 6, p. 977-992 16 p., mcy230.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (SciVal)126 Downloads (Pure) -
Physiological and biochemical basis for stay-green trait in sorghum
Galyuon, I. K. A., Gay, A., Borrell, A. K. & Howarth, C. J., 2019, In: African Crop Science Journal. 27, 4, p. 653, 677Research output: Contribution to journal › Article › peer-review
Open AccessFile119 Downloads (Pure)
Projects
- 3 Finished
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Introgression and wide hybrid genetics, genomics and germplasm development in Lolium/Festuca (Festulolium) and white clover
Biotechnology and Biological Sciences Research Council
01 Apr 2012 → 31 Mar 2017
Project: Externally funded research
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Developing tools and resources for oat breeding
01 Apr 2012 → 31 Mar 2017
Project: Externally funded research
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C3G: Lolium and Trifolium genetics, genomics and germplasm development
Armstead, I., Jenkins, G., Marshall, A., Skot, L., Thomas, I. & Thorogood, D.
01 Apr 2012 → 31 Mar 2017
Project: Externally funded research