Research output per year
Research output per year
- 42 results
Search results
-
2021
A deep learning-integrated micro-CT image analysis pipeline for quantifying rice lodging resistance-related traits
Wu, D., Wu, D., Feng, H., Duan, L., Dai, G., Liu, X., Wang, K., Yang, P., Chen, G., Gay, A. P., Doonan, J. H., Niu, Z., Xiong, L. & Yang, W., 08 Mar 2021, In: Plant Communications. 2, 2, 100165.Research output: Contribution to journal › Article › peer-review
Open AccessFile35 Citations (Scopus)138 Downloads (Pure) -
2020
Drought priming effects on alleviating the photosynthetic limitations of wheat cultivars (Triticum aestivum L.) with contrasting tolerance to abiotic stresses
Mendanha, T., Rosenqvist, E., Nordentoft Hyldgaard, B., Doonan, J. H. & Ottosen, C. O., 27 Nov 2020, In: Journal of Agronomy and Crop Science. 206, 6, p. 651-664 14 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile19 Citations (Scopus)247 Downloads (Pure) -
Genotypic variations in leaf and whole-plant water use efficiencies are closely related in bread wheat genotypes under well-watered and water-limited conditions during grain filling
del Pozo, A., Méndez-Espinoza, A. M., Romero-Bravo, S., Garriga, M., Estrada, F., Alcaíno, M., Camargo-Rodriguez, A. V., Corke, F. M. K., Doonan, J. H. & Lobos, G. A., 16 Jan 2020, In: Scientific Reports. 10, 1, 460.Research output: Contribution to journal › Article › peer-review
Open AccessFile28 Citations (Scopus)130 Downloads (Pure) -
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors
Gordon, S. P., Contreras-Moreira, B., Levy, J. J., Djamei, A., Czedik-Eysenberg, A., Tartaglio, V. S., Session, A., Martin, J., Cartwright, A., Katz, A., Singan, V. R., Goltsman, E., Barry, K., Dinh-Thi, V. H., Chalhoub, B., Diaz-Perez, A., Sancho, R., Lusinska, J., Wolny, E. & Nibau, C. & 13 others, , 29 Jul 2020, In: Nature Communications. 11, 1, 16 p., 3670.Research output: Contribution to journal › Article › peer-review
Open AccessFile63 Citations (Scopus)260 Downloads (Pure) -
High-Throughput Genome-Wide Genotyping To Optimize the Use of Natural Genetic Resources in the Grassland Species Perennial Ryegrass (Lolium perenne L.)
Keep, T., Sampoux, J. P., Blanco-Pastor, J. L., Dehmer, K. J., Hegarty, M. J., Ledauphin, T., Litrico, I., Muylle, H., Roldán-Ruiz, I., Roschanski, A. M., Ruttink, T., Surault, F., Willner, E. & Barre, P., 01 Sept 2020, In: G3 (Bethesda, Md.). 10, 9, p. 3347-3364 18 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile20 Citations (Scopus)121 Downloads (Pure) -
Semi-Automated Field Plot Segmentation From UAS Imagery for Experimental Agriculture
Robb, C., Hardy, A., Doonan, J. H. & Brook, J., 09 Dec 2020, In: Frontiers in Plant Science. 11, 13 p., 591886.Research output: Contribution to journal › Article › peer-review
Open AccessFile15 Citations (Scopus)134 Downloads (Pure) -
2019
A comparative assessment of the performance of a stay-green sorghum (Sorghum bicolor (L) Moench) introgression line developed by marker-assisted selection and its parental lines
Galyuon, I. K., Gay, A., Hash, C. T., Bidinger, F. R. & Howarth, C., 26 Jun 2019, In: African Journal of Biotechnology. 18, 26, p. 548-563 16 p., 7118D0361330.Research output: Contribution to journal › Article › peer-review
Open AccessFile258 Downloads (Pure) -
Differential gene expression and gene ontologies associated with increasing water-stress in leaf and root transcriptomes of perennial ryegrass (Lolium perenne)
Fradera-Sola, A., Thomas, A., Gasior, D., Harper, J., Hegarty, M., Armstead, I. & Fernandez Fuentes, N., 30 Jul 2019, In: PLoS ONE. 14, 7, e0220518.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)183 Downloads (Pure) -
Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species
Maughan, P. J., Lee, R., Walstead, R., Vickerstaff, R. J., Fogarty, M. C., Brouwer, C. R., Reid, R. R., Jay, J. J., Bekele, W. A., Jackson, E. W., Tinker, N. A., Langdon, T., Schlueter, J. A. & Jellen, E. N., 22 Nov 2019, In: BMC Biology. 17, 1, 92.Research output: Contribution to journal › Article › peer-review
Open AccessFile55 Citations (Scopus)155 Downloads (Pure) -
Integrating a newly developed BAC-based physical mapping resource for Lolium perenne with a genome-wide association study across a L. Perenne European ecotype collection identifies genomic contexts associated with agriculturally important traits
Harper, J., de Vega, J., Swain, S., Heavens, D., Gasior, D., Thomas, A., Evans, C., Lovatt, A., Lister, S., Thorogood, D., Skot, L., Hegarty, M., Blackmore, T., Kudrna, D., Byrne, S., Asp, T., Powell, W., Fernandez-Fuentes, N. & Armstead, I., 08 May 2019, In: Annals of Botany. 123, 6, p. 977-992 16 p., mcy230.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Citations (Scopus)169 Downloads (Pure) -
Physiological and biochemical basis for stay-green trait in sorghum
Galyuon, I. K. A., Gay, A., Borrell, A. K. & Howarth, C. J., 2019, In: African Crop Science Journal. 27, 4, p. 653, 677Research output: Contribution to journal › Article › peer-review
Open AccessFile150 Downloads (Pure) -
Rapid UHPLC-MS metabolite profiling and phenotypic assays reveal genotypic impacts of nitrogen supplementation in oats
Allwood, J. W., Xu, Y., Martinez-Martin, P., Palau, R., Cowan, S., Goodacre, R., Marshall, A., Stewart, D. & Howarth, C., 12 Mar 2019, In: Metabolomics. 15, 3, 42.Research output: Contribution to journal › Article › peer-review
Open AccessFile16 Citations (Scopus)312 Downloads (Pure) -
Water-Saving Traits Can Protect Wheat Grain Number Under Progressive Soil Drying at the Meiotic Stage: A Phenotyping Approach
Faralli, M., Williams, K., Han, J., Corke, F., Doonan, J. & Kettlewell, P. S., 01 Dec 2019, In: Journal of Plant Growth Regulation. 38, 4, p. 1562-1573 12 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile19 Citations (Scopus)117 Downloads (Pure) -
2018
Haplotype based genotyping-by-sequencing in oat genome research
Bekele, W. A., Wight, C. P., Chao, S., Howarth, C. & Tinker, N. A., 25 Mar 2018, In: Plant Biotechnology Journal. 16, 8, p. 1452-1463 12 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile87 Citations (Scopus)202 Downloads (Pure) -
Identification of Stipules reduced, a leaf morphology gene in pea (Pisum sativum)
Moreau, C., Hofer, J. M., Eléouët, M., Sinjushin, A., Ambrose, M., Skøt, K., Blackmore, T., Swain, M., Hegarty, M., Balanza, V., Ferrándiz, C. & Ellis, T. H. N., 01 Oct 2018, In: New Phytologist. 220, 1, p. 288-299 12 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile26 Citations (Scopus)185 Downloads (Pure) -
Mapping of easy to screen SSR markers for selection of RFLP markers-bracketed downy mildew resistance QTLs in pearl millet
Taunk, J., Sehgal, D., Yadav, N., Howarth, C., Yadav, R. & Yadav, R., 01 Jun 2018, In: European Journal of Plant Pathology. 151, 2, p. 401-411 11 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Citations (Scopus)160 Downloads (Pure) -
2017
Deep sequencing of Suppression Subtractive Hybridisation drought and recovery libraries of the non-model crop Trifolium repens L.
Bisaga, M., Lowe, M., Hegarty, M., Abberton, M. & Ravagnani, A., 23 Feb 2017, In: Frontiers in Plant Science. 8, 213.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Citations (Scopus)192 Downloads (Pure) -
Expression of a fungal ferulic acid esterase in suspension cultures of tall fescue (Festuca arundinacea) decreases cell wall feruloylation and increases rates of cell wall digestion
Morris, P., Dalton, S., Langdon, T., Hauck, B. & Buanafina, M. M. D. O., 01 May 2017, In: Plant Cell, Tissue and Organ Culture. 129, 2, p. 181-193 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile5 Citations (Scopus)190 Downloads (Pure) -
iFrag: A Protein-Protein Interface Prediction Server Based on Sequence Fragments
Garcia-Garcia, J., Valls-Comamala, V., Guney, E., Andreu, D., Muñoz , F. J., Fernandez-Fuentes, N. & Oliva, B., 03 Feb 2017, In: Journal of Molecular Biology. 429, 3, p. 382-389 8 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile34 Citations (Scopus)161 Downloads (Pure) -
Linking Auxin with Photosynthetic Rate via Leaf Venation
Mcadam, S. A. M., Eléouët, M. P., Best, M., Brodribb, T. J., Murphy, M. C., Cook, S. D., Dalmais, M., Dimitriou, T., Gélinas-Marion, A., Gill, W. M., Hegarty, M., Hofer, J. M. I., Maconochie, M., Mcadam, E. L., McGuiness, P., Nichols, D. S., Ross, J. J., Sussmilch, F. C. & Urquhart, S., 30 Sept 2017, In: Plant Physiology. 175, 1, p. 351-360 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile50 Citations (Scopus)171 Downloads (Pure) -
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
Cooper, L., Meier, A., Laporte, M.-A., Elser, J. L., Mungall, C., Sinn, B. T., Cabaliere, D., Carbon, S., Dunn, N. A., Smith, B., Qu, B., Preece, J., Zhang, E., Todorovic, S., Gkoutos, G., Doonan, J., Stevenson, D. W., Arnaud, E. & Jaiswal, P., 23 Nov 2017, In: Nucleic Acids Research. gkx1152.Research output: Contribution to journal › Article › peer-review
Open AccessFile134 Citations (Scopus)182 Downloads (Pure) -
2016
Automated estimation of tiller number in wheat by ribbon detection
Boyle, R. D., Corke, F. M. K. & Doonan, J. H., Jul 2016, In: Machine Vision and Applications. 27, 5, p. 637-646 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile13 Citations (Scopus)289 Downloads (Pure) -
Genetic diversity of stay-green sorghums and their derivatives revealed by microsatellites
Galyuon, I. K. A. & Howarth, C., 22 Jun 2016, In: African Journal of Biotechnology. 15, 25, p. 1363-1374Research output: Contribution to journal › Article › peer-review
Open AccessFile174 Downloads (Pure) -
Implementation of genomic prediction in Lolium perenne (L.) breeding populations
Grinberg, N., Lovatt, A., Hegarty, M., Macfarlane, A. C., Skot, K., Kelly, R., Blackmore, T., Thorogood, D., King, R. D., Armstead, I., Powell, W. & Skot, L., 12 Feb 2016, In: Frontiers in Plant Science. 7, FEB2016, 10 p., 133.Research output: Contribution to journal › Article › peer-review
Open AccessFile52 Citations (Scopus)183 Downloads (Pure) -
Insight into the machinery that oils chromatin dynamics
Wright, R. H. G., Fernandez-Fuentes, N., Oliva, B. & Beato, M., 28 Nov 2016, In: Nucleus. 7, 6, p. 532-539Research output: Contribution to journal › Article › peer-review
Open Access7 Citations (Scopus) -
InteractoMIX: A suite of computational tools to exploit interactomes in biological and clinical research
Poglayen, D., Marín-López, M. A., Bonet, J., Fornes, O., Garcia-Garcia, J., Planas-Iglesias, J., Segura, J., Oliva, B. & Fernandez-Fuentes, N., 09 Jun 2016, In: Biochemical Society Transactions. 44, 3, p. 917-924 8 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)99 Downloads (Pure) -
MetaPred2CS: A sequence-based meta-predictor for protein-protein interactions of prokaryotic two-component system proteins
Kara, A., Vickers, M., Swain, M., Whitworth, D. & Fernandez-Fuentes, N., 01 Nov 2016, In: Bioinformatics. 32, 21, p. 3339-3341 3 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)86 Downloads (Pure) -
Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment
Lensink, M. F., Velankar, S., Kryshtafovych, A., Huang, S.-Y., Schneidman-Duhovny, D., Sali, A., Segura, J., Fernandez-fuentes, N., Viswanath, S., Elber, R., Grudinin, S., Popov, P., Neveu, E., Lee, H., Baek, M., Park, S., Heo, L., Rie Lee, G., Seok, C. & Qin, S. & 30 others, , 20 Sept 2016, In: Proteins: Structure, Function and Genetics. 84, S1, p. 323-348Research output: Contribution to journal › Article › peer-review
Open AccessFile125 Citations (Scopus)209 Downloads (Pure) -
The GH51 α-l-arabinofuranosidase from Paenibacillus sp. THS1 is multifunctional, hydrolyzing main-chain and side-chain glycosidic bonds in heteroxylans.
Bouraoui, H., Desrousseaux, M.-L., Ioannou, E., Alvira, P., Manaï, M., Rémond,, C., Dumon, C., Fernandez-Fuentes, N. & O'Donohue, M. J., 08 Jul 2016, In: Biotechnology for Biofuels. 9, 140.Research output: Contribution to journal › Article › peer-review
Open AccessFile28 Citations (Scopus)179 Downloads (Pure) -
2015
A synteny-based draft genome sequence of the forage grass Lolium perenne
Byrne, S. L., Nagy, I., Pfeifer, M., Armstead, I., Swain, S., Studer, B., Campbell, J., Czaban, A., Hentrup, S., Panitz, F., Bendixen, C., Hedegaard, J., Caccamo, M., Asp, T. & Mayer, K., 13 Nov 2015, In: Plant Journal. 84, 4, p. 816-826 11 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile136 Citations (Scopus)185 Downloads (Pure) -
Genetic identification of Kazakhstan Oat varieties
Nurpeissov, M., Abugaliyeva, A. & Langdon, T., 01 Dec 2015, In: Biosciences Biotechnology Research Asia. 12, 3, p. 2227-2233 7 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor
Kara, A., Vickers, M., Swain, M., Whitworth, D. E. & Fernandez-Fuentes, N., 2015, In: BMC Bioinformatics. 16, 1, 297.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)145 Downloads (Pure) -
Human IgG1 Responses to Surface Localised Schistosoma mansoni Ly6 Family Members Drop following Praziquantel Treatment
Chalmers, I. W., Fitzsimmons, C. M., Brown, M., Pierrot, C., Jones, F. M., Wawrzyniak, J. M., Fernandez-Fuentes, N., Tukahebwa, E. M., Dunne, D. W., Khalife, J. & Hoffmann, K. F., Jul 2015, In: PLoS Neglected Tropical Diseases. 9, 7, p. e0003920 e0003920.Research output: Contribution to journal › Article › peer-review
Open AccessFile14 Citations (Scopus)198 Downloads (Pure) -
VORFFIP-Driven Dock: V-D 2OCK, a fast, accurate protein docking strategy
Segura, J., Marín-López, M. A., Jones, P. F., Oliva, B., Fernandez-fuentes, N. & Keskin, O. (Editor), 12 Mar 2015, In: PLoS ONE. 10, 3, e0118107.Research output: Contribution to journal › Article › peer-review
Open AccessFile20 Citations (Scopus)130 Downloads (Pure) -
2014
ArchDB 2014: Structural classification of loops in proteins
Bonet, J., Planas-Iglesias, J., Garcia-Garcia, J., Marín-López, M. A., Fernandez-Fuentes, N. & Oliva, B., 01 Jan 2014, In: Nucleic Acids Research. 42, D1, p. D315-D319 5 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile39 Citations (Scopus)199 Downloads (Pure) -
Conformational flexibility of the oncogenic protein LMO2 primes the formation of the multi-protein transcription complex
Sewell, H., Tanaka, T., Omari, K. E., Mancini, E. J., Cruz, A., Fernandez-Fuentes, N., Chambers, J. & Rabbitts, T. H., 10 Jan 2014, In: Scientific Reports. 4, 3643.Research output: Contribution to journal › Article › peer-review
Open AccessFile16 Citations (Scopus)147 Downloads (Pure) -
Frag’r’Us: Knowledge-based sampling of protein backbone conformations for de novo structure-based protein design
Bonet, J., Segura, J., Planas-Iglesias, J., Oliva, B. & Fernandez-Fuentes, N., 01 Jul 2014, In: Bioinformatics. 30, 13, p. 1935-1936Research output: Contribution to journal › Article › peer-review
Open AccessFile17 Citations (Scopus)166 Downloads (Pure) -
Objective Definition of Rosette Shape Variation Using a Combined Computer Vision and Data Mining Approach
Camargo-Rodriguez, A., Papadopoulou, D., Spyropoulou, Z., Vlachonasios, K., Doonan, J. H., Gay, A. P. & Candela, H. (Editor), 07 May 2014, In: PLoS ONE. 9, 5, p. e96889 11 p., e96889.Research output: Contribution to journal › Article › peer-review
Open AccessFile28 Citations (Scopus)169 Downloads (Pure) -
2013
Stomatal lock-up following pathogenic challenge: Source or symptom of costs of resistance in crops?
Mur, L. A. J., Simpson, C., Gay, A., Paveley, N., Sanchez-Martin, J. & Prats, E., Dec 2013, In: Plant Pathology. 62, S1, p. 72-82 11 p.Research output: Contribution to journal › Article › peer-review
12 Citations (Scopus) -
The development of chlorophyll-based markers in poultry diets to aid detection of fluorescent fecal contamination
Lee, M. R. F., Leemans, D., Theobald, V. J., Fleming, H. R. & Gay, A. P., 01 Dec 2013, In: Poultry Science. 92, 12, p. 3251-3258 8 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)34 Downloads (Pure) -
Variation in canopy duration in the perennial biofuel crop Miscanthus reveals complex associations with yield: Canopy duration and yield in Miscanthus
Robson, P. R. H., Farrar, K., Gay, A. P., Jensen, E. F., Clifton-Brown, J. C. & Donnison, I. S., 2013, In: Journal of Experimental Biology. 64, 8, p. 2373-2383Research output: Contribution to journal › Article › peer-review
36 Citations (Scopus) -
2012
A holistic in silico approach to predict functional sites in protein structures
Segura, J., Jones, P. F. & Fernandez-Fuentes, N., 15 Jul 2012, In: Bioinformatics. 28, 14, p. 1845-1850Research output: Contribution to journal › Article › peer-review
Open AccessFile29 Citations (Scopus)107 Downloads (Pure)