Using Reference -assisted chromosome assemblies to study chromosome structures and evolution in vertebrates

  • Larkin, Denis Mikhailovich (PI)

Project: Externally funded research

Project Details

StatusFinished
Effective start/end date06 Sept 201205 Sept 2015

Funding

  • Biotechnology and Biological Sciences Research Council (Funder reference unknown): £241,531.72

Fingerprint

Explore the research topics touched on by this project. These labels are generated based on the underlying awards/grants. Together they form a unique fingerprint.
  • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks

    Farré, M., Kim, J., Proskuryakova, A. A., Zhang, Y., Kulemzina, A. I., Li, Q., Zhou, Y., Xiong, Y., Johnson, J. L., Perelman, P. L., Johnson, W. E., Warren, W. C., Kukekova, A. V., Zhang, G., O'Brien, S. J., Ryder, O. A., Graphodatsky, A. S., Ma, J., Lewin, H. A. & Larkin, D. M., Apr 2019, In: Genome Research. 29, 4, p. 576-589 14 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    29 Citations (SciVal)
    139 Downloads (Pure)
  • Chromosome-level assembly reveals extensive rearrangement in saker falcon and budgerigar, but not ostrich, genomes

    O'Connor, R. E., Farré, M., Joseph, S., Damas, J., Kiazim, L., Jennings, R., Bennett, S., Slack, E. A., Allanson, E., Larkin, D. M. & Griffin, D. K., 24 Oct 2018, In: Genome Biology. 19, 1, 171.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    47 Citations (SciVal)
    131 Downloads (Pure)
  • Construction of Red Fox Chromosomal Fragments from the Short-Read Genome Assembly

    Rando, H. M., Farré, M., Robson, M. P., Won, N. B., Johnson, J. L., Buch, R., Bastounes, E. R., Xiang, X., Feng, S., Liu, S., Xiong, Z., Kim, J., Zhang, G., Trut, L. N., Larkin, D. M. & Kukekova, A. V., 20 Jun 2018, In: Genes. 9, 6, 308.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    8 Citations (SciVal)
    141 Downloads (Pure)
  • Reconstruction of avian ancestral karyotypes reveals differences in the evolutionary history of macro- and microchromosomes

    Damas, J., Kim, J., Farré, M., Griffin, D. K. & Larkin, D. M., 05 Oct 2018, In: Genome Biology. 19, 1, 155.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    35 Citations (SciVal)
    139 Downloads (Pure)
  • Reconstruction of the diapsid ancestral genome permits chromosome evolution tracing in avian and non-avian dinosaurs

    O'Connor, R. E., Romanov, M. N., Kiazim, L. G., Barrett, P. M., Farré, M., Damas, J., Ferguson-Smith, M., Valenzuela, N., Larkin, D. M. & Griffin, D. K., 21 May 2018, In: Nature Communications. 9, 1883.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    46 Citations (SciVal)
    141 Downloads (Pure)
  • Upgrading short read animal genome assemblies to chromosome level using comparative genomics and a universal probe set

    Damas, J., O'Connor, R., Farré, M., Lenis, V., Martell, H., Mandawala, A., Fowler, K., Joseph, S., Swain, M., Griffin, D. & Larkin, D. M., 01 May 2017, In: Genome Research. 27, 5, p. 875-884 10 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    68 Citations (SciVal)
    161 Downloads (Pure)
  • Novel insights into chromosome evolution in birds, archosaurs, and reptiles

    Farré, M., Narayan, J., Slavov, G., Damas, J., Auvil, L., Li, C., Jarvis, E. D., Burt, D. W., Griffin, D. K. & Larkin, D. M., 25 Aug 2016, In: Genome Biology and Evolution. 8, 8, p. 2442-2451 10 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    50 Citations (SciVal)
    146 Downloads (Pure)
  • Population structure and history of the Welsh sheep breeds determined by whole genome genotyping

    Beynon, S. E., Slavov, G. T., Farré-Belmonte, M., Sunduimijid, B., Waddams, K., Davies, B., Haresign, W., Kijas, J., Macleod, I. M., Newbold, C. J., Davies, L. & Larkin, D. M., 20 Jun 2015, In: BMC Genetics. 16, 1, 65.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    51 Citations (SciVal)
    231 Downloads (Pure)
  • Comparative genomics reveals insights into avian genome evolution and adaptation

    Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., Yang, W., & 85 othersHu, J., Xiao, J., Yang, Z., Liu, Y., Xie, Q., Yu, H., Lian, J., Wen, P., Zhang, F., Li, H., Zeng, Y., Xiong, Z., Liu, S., Zhou, L., Huang, Z., An, N., Wang, J., Zheng, Q., Xiong, Y., Wang, G., Wang, B., Wang, J., Fan, Y., da Fonseca, R. R., Alfaro-Núñez, A., Schubert, M., Orlando, L., Mourier, T., Howard, J. T., Ganapathy, G., Pfenning, A., Whitney, O., Rivas, M. V., Hara, E., Smith, J., Farré-Belmonte, M., Narayan, J., Slavov, G., Romanov, M. N., Borges, R., Machado, J. P., Khan, I., Springer, M. S., Gatesy, J., Hoffmann, F. G., Opazo, J. C., Håstad, O., Sawyer, R. H., Kim, H., Kim, K-W., Kim, H. J., Cho, S., Li, N., Huang, Y., Bruford, M. W., Zhan, X., Dixon, A., Bertelsen, M. F., Derryberry, E., Warren, W., Wilson, R. K., Li, S., Ray, D. A., Green, R. E., O'Brien, S. J., Griffin, D., Johnson, W. E., Haussler, D., Ryder, O. A., Willerslev, E., Graves, G. R., Alstrom, P., Fjeldsa, J., Mindell, D. P., Edwards, S. V., Braun, E. L., Rahbek, C., Burt, D. W., Houde, P., Zhang, Y., Yang, H., Wang, J., Jarvis, E. D., Gilbert, M. T. P. & Wang, J., 12 Dec 2014, In: Science. 346, 6215, p. 1311-1320 10 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    671 Citations (SciVal)
    160 Downloads (Pure)
  • Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax

    Fang, X., Nevo, E., Han, L., Levanon, E. Y., Zhao, J., Avivi, A., Larkin, D., Jiang, X., Feranchuk, S., Zhu, Y., Fishman, A., Feng, Y., Sher, N., Xiong, Z., Hankeln, T., Huang, Z., Gorbunova, V., Zhang, L., Zhao, W., Wildman, D. E., & 33 othersXiong, Y., Gudkov, A., Zheng, Q., Rechavi, G., Liu, S., Bazak, L., Chen, J., Knisbacher, B. A., Lu, Y., Shams, I., Gajda, K. P., Farré-Belmonte, M., Kim, J., Lewin, H. A., Ma, J., Band, M., Bicker, A., Kranz, A., Mattheus, T., Schmidt, H., Seluanov, A., Azpurua, J., Mcgowen, M. R., Ben Jacob, E., Li, K., Peng, S., Zhu, X., Liao, X., Li, S., Krogh, A., Zhou, X., Brodsky, L. & Wang, J., 03 Jun 2014, In: Nature Communications. 5, 3966.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    112 Citations (SciVal)