Developing a PhysioMap

Daniel L. Cook; Neal Maxwell; Robert Hoehndorf; Georgios Gkoutos; John H. Gennari

Developing a PhysioMap

Daniel L. Cook, Neal Maxwell, Robert Hoehndorf, Georgios Gkoutos, John H. Gennari

Department of Computer Science

Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (ISBN)

Abstract

As the number and size of biological knowledge resources for physiology grows, we need improved tools for searching and integrating knowledge and physiological models. Unfor- tunately, current resources are not always explicit about the biological semantics that they describe. Here, we present a formal approach that divides physiological knowledge into three partitions: structural knowledge, process knowledge and biophysical knowledge. We show how these are inter- related and present a PhysioMap, as a means to connect all three views.

Original language	English
Title of host publication	Proceedings of the 14th Bio-Ontologies Meeting
Editors	Larisa Soldatova, Susanna-Assunta Sansone, Michel Dumontier, Nigam Shah
Pages	50-53
Number of pages	4
Publication status	Published - 01 Jul 2012
Event	15th Annual Bio-Ontologies Meeting - Long Beach, United States of America Duration: 13 Jul 2012 → 14 Jul 2012

Conference

Conference	15th Annual Bio-Ontologies Meeting
Country/Territory	United States of America
City	Long Beach
Period	13 Jul 2012 → 14 Jul 2012

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title = "Developing a PhysioMap",

abstract = "As the number and size of biological knowledge resources for physiology grows, we need improved tools for searching and integrating knowledge and physiological models. Unfor- tunately, current resources are not always explicit about the biological semantics that they describe. Here, we present a formal approach that divides physiological knowledge into three partitions: structural knowledge, process knowledge and biophysical knowledge. We show how these are inter- related and present a PhysioMap, as a means to connect all three views.",

author = "Cook, \{Daniel L.\} and Neal Maxwell and Robert Hoehndorf and Georgios Gkoutos and Gennari, \{John H.\}",

year = "2012",

month = jul,

day = "1",

language = "English",

pages = "50--53",

editor = "Larisa Soldatova and Susanna-Assunta Sansone and Michel Dumontier and Nigam Shah",

booktitle = "Proceedings of the 14th Bio-Ontologies Meeting",

note = "15th Annual Bio-Ontologies Meeting ; Conference date: 13-07-2012 Through 14-07-2012",

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TY - GEN

T1 - Developing a PhysioMap

AU - Cook, Daniel L.

AU - Maxwell, Neal

AU - Hoehndorf, Robert

AU - Gkoutos, Georgios

AU - Gennari, John H.

PY - 2012/7/1

Y1 - 2012/7/1

N2 - As the number and size of biological knowledge resources for physiology grows, we need improved tools for searching and integrating knowledge and physiological models. Unfor- tunately, current resources are not always explicit about the biological semantics that they describe. Here, we present a formal approach that divides physiological knowledge into three partitions: structural knowledge, process knowledge and biophysical knowledge. We show how these are inter- related and present a PhysioMap, as a means to connect all three views.

AB - As the number and size of biological knowledge resources for physiology grows, we need improved tools for searching and integrating knowledge and physiological models. Unfor- tunately, current resources are not always explicit about the biological semantics that they describe. Here, we present a formal approach that divides physiological knowledge into three partitions: structural knowledge, process knowledge and biophysical knowledge. We show how these are inter- related and present a PhysioMap, as a means to connect all three views.

UR - http://hdl.handle.net/2160/11103

M3 - Conference Proceeding (ISBN)

SP - 50

EP - 53

BT - Proceedings of the 14th Bio-Ontologies Meeting

A2 - Soldatova, Larisa

A2 - Sansone, Susanna-Assunta

A2 - Dumontier, Michel

A2 - Shah, Nigam

T2 - 15th Annual Bio-Ontologies Meeting

Y2 - 13 July 2012 through 14 July 2012

ER -

Developing a PhysioMap

Abstract

Conference

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