DISMISS: MeDIP-seq: High-throughput sequencing

Umar Niazi; Kathrin Geyer; Martin Vickers; Karl Hoffmann; Martin Swain

doi:10.20391/670230eb-f58d-4bc0-afbf-1db7ad67d210

DISMISS: MeDIP-seq: High-throughput sequencing

Umar Niazi, Kathrin Geyer, Martin Vickers (Developer), Karl Hoffmann, Martin Swain

Department of Life Sciences

Imperial College London

Research output: Non-textual form › Software

Abstract

An R script, which as an additional step in MeDIP-Seq data analysis workflow, enables the allocation of strands to methylated DNA regions. DISMISS does this by analyzing the proportions of first mate reads aligning to the methylated locus from the plus and minus strands.

Original language	English
Publisher	GitHub
Media of output	Online
DOIs	https://doi.org/10.20391/670230eb-f58d-4bc0-afbf-1db7ad67d210
Publication status	Published - 02 Aug 2016

Keywords

DNA methylation
MeDIP-Seq
BS-Seq
Apis mellifera
DISMISS
Epigenetics
Asymmetric
Galaxy

Access to Document

10.20391/670230eb-f58d-4bc0-afbf-1db7ad67d210Licence: GPLv3

DISMISS ReleaseFinal published version, 18.1 KBLicence: GPLv3

https://uhkniazi.github.io/dismiss/Licence: GPLv3

Permanent link

Persistent link

Martin Swain
- mts11aber.acuk
- Department of Life Sciences - Senior Lecturer
Person: Teaching And Research

Cite this

@misc{670230ebf58d4bc0afbf1db7ad67d210,

title = "DISMISS: MeDIP-seq: High-throughput sequencing",

abstract = "An R script, which as an additional step in MeDIP-Seq data analysis workflow, enables the allocation of strands to methylated DNA regions. DISMISS does this by analyzing the proportions of first mate reads aligning to the methylated locus from the plus and minus strands.",

keywords = "DNA methylation, MeDIP-Seq, BS-Seq, Apis mellifera, DISMISS, Epigenetics, Asymmetric, Galaxy",

author = "Umar Niazi and Kathrin Geyer and Martin Vickers and Karl Hoffmann and Martin Swain",

year = "2016",

month = aug,

day = "2",

doi = "10.20391/670230eb-f58d-4bc0-afbf-1db7ad67d210",

language = "English",

publisher = "GitHub",

}

TY - ADVS

T1 - DISMISS

T2 - MeDIP-seq: High-throughput sequencing

AU - Niazi, Umar

AU - Geyer, Kathrin

AU - Hoffmann, Karl

AU - Swain, Martin

A2 - Vickers, Martin

PY - 2016/8/2

Y1 - 2016/8/2

N2 - An R script, which as an additional step in MeDIP-Seq data analysis workflow, enables the allocation of strands to methylated DNA regions. DISMISS does this by analyzing the proportions of first mate reads aligning to the methylated locus from the plus and minus strands.

AB - An R script, which as an additional step in MeDIP-Seq data analysis workflow, enables the allocation of strands to methylated DNA regions. DISMISS does this by analyzing the proportions of first mate reads aligning to the methylated locus from the plus and minus strands.

KW - DNA methylation

KW - MeDIP-Seq

KW - BS-Seq

KW - Apis mellifera

KW - DISMISS

KW - Epigenetics

KW - Asymmetric

KW - Galaxy

U2 - 10.20391/670230eb-f58d-4bc0-afbf-1db7ad67d210

DO - 10.20391/670230eb-f58d-4bc0-afbf-1db7ad67d210

M3 - Software

PB - GitHub

ER -

DISMISS: MeDIP-seq: High-throughput sequencing

Abstract

Keywords

Access to Document

Permanent link

Fingerprint

Profiles

Martin Swain

Cite this