Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen: Genome sequence of pearl millet downy mildew pathogen

S. Chandra Nayaka; H. Shekar  Shetty; C. Tara Satyavathib; Rattan Yadav; P. B. Kavi Kishor; M. Nagaraju; T. A. Anoop; M. Milner Kumar; Boney Kuriakose; Navajeet Chakravartty; A. V. S. K. Mohan Katta; V. B. Reddy Lachagan; Om Vir Singh; Pranav Pankaj Sahu; Swati Puranik; Rakesh Srivastava; Pankaj Kaushal

doi:10.1016/j.btre.2017.07.006

Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen: Genome sequence of pearl millet downy mildew pathogen

S. Chandra Nayaka , H. Shekar Shetty, C. Tara Satyavathib, Rattan Yadav, P. B. Kavi Kishor, M. Nagaraju, T. A. Anoop, M. Milner Kumar, Boney Kuriakose, Navajeet Chakravartty, A. V. S. K. Mohan Katta, V. B. Reddy Lachagan, Om Vir Singh, Pranav Pankaj Sahu, Swati Puranik, Rakesh Srivastava, Pankaj Kaushal

Department of Life Sciences

Research output: Contribution to journal › Article › peer-review

13 Citations (Scopus)

117 Downloads (Pure)

Abstract

Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genome assembly contained 299,901,251 bp with 65,404 genes. This study may help understand the evolutionary pattern of pathogen and aid elucidation of effector evolution for devising effective durable resistance breeding strategies in pearl millet.

Original language	English
Pages (from-to)	18-20
Number of pages	3
Journal	Biotechnology Reports
Volume	16
Early online date	24 Aug 2017
DOIs	https://doi.org/10.1016/j.btre.2017.07.006
Publication status	Published - 01 Dec 2017

Keywords

Downy mildew
Pathotype 1
Pearl millet
Sclerospora graminicola
Whole genome sequence

Access to Document

10.1016/j.btre.2017.07.006Licence: CC BY-NC-ND

Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogenFinal published version, 148 KBLicence: CC BY-NC-ND

Permanent link

Persistent link

Cite this

Nayaka , S. C., Shetty, H. S., Tara Satyavathib, C., Yadav, R., Kishor, P. B. K., Nagaraju, M., Anoop, T. A., Kumar, M. M., Kuriakose, B., Chakravartty, N., Katta, A. V. S. K. M., Lachagan, V. B. R., Singh, O. V., Sahu, P. P., Puranik, S., Srivastava, R., & Kaushal, P. (2017). Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen: Genome sequence of pearl millet downy mildew pathogen . Biotechnology Reports, 16, 18-20. https://doi.org/10.1016/j.btre.2017.07.006

@article{44d15e08d4bd4632b4e1553eaf308733,

title = "Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen: Genome sequence of pearl millet downy mildew pathogen ",

abstract = "Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genome assembly contained 299,901,251 bp with 65,404 genes. This study may help understand the evolutionary pattern of pathogen and aid elucidation of effector evolution for devising effective durable resistance breeding strategies in pearl millet.",

keywords = "Downy mildew, Pathotype 1, Pearl millet, Sclerospora graminicola, Whole genome sequence",

author = "Nayaka, {S. Chandra} and Shetty, {H. Shekar} and {Tara Satyavathib}, C. and Rattan Yadav and Kishor, {P. B. Kavi} and M. Nagaraju and Anoop, {T. A.} and Kumar, {M. Milner} and Boney Kuriakose and Navajeet Chakravartty and Katta, {A. V. S. K. Mohan} and Lachagan, {V. B. Reddy} and Singh, {Om Vir} and Sahu, {Pranav Pankaj} and Swati Puranik and Rakesh Srivastava and Pankaj Kaushal",

note = "Publisher Copyright: {\textcopyright} 2017",

year = "2017",

month = dec,

day = "1",

doi = "10.1016/j.btre.2017.07.006",

language = "English",

volume = "16",

pages = "18--20",

journal = "Biotechnology Reports",

issn = "2215-017X",

publisher = "Elsevier",

}

Nayaka , SC, Shetty, HS, Tara Satyavathib, C, Yadav, R, Kishor, PBK, Nagaraju, M, Anoop, TA, Kumar, MM, Kuriakose, B, Chakravartty, N, Katta, AVSKM, Lachagan, VBR, Singh, OV, Sahu, PP, Puranik, S, Srivastava, R & Kaushal, P 2017, 'Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen: Genome sequence of pearl millet downy mildew pathogen ', Biotechnology Reports, vol. 16, pp. 18-20. https://doi.org/10.1016/j.btre.2017.07.006

TY - JOUR

T1 - Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen

T2 - Genome sequence of pearl millet downy mildew pathogen

AU - Nayaka , S. Chandra

AU - Shetty, H. Shekar

AU - Tara Satyavathib, C.

AU - Yadav, Rattan

AU - Kishor, P. B. Kavi

AU - Nagaraju, M.

AU - Anoop, T. A.

AU - Kumar, M. Milner

AU - Kuriakose, Boney

AU - Chakravartty, Navajeet

AU - Katta, A. V. S. K. Mohan

AU - Lachagan, V. B. Reddy

AU - Singh, Om Vir

AU - Sahu, Pranav Pankaj

AU - Puranik, Swati

AU - Srivastava, Rakesh

AU - Kaushal, Pankaj

PY - 2017/12/1

Y1 - 2017/12/1

N2 - Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genome assembly contained 299,901,251 bp with 65,404 genes. This study may help understand the evolutionary pattern of pathogen and aid elucidation of effector evolution for devising effective durable resistance breeding strategies in pearl millet.

AB - Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genome assembly contained 299,901,251 bp with 65,404 genes. This study may help understand the evolutionary pattern of pathogen and aid elucidation of effector evolution for devising effective durable resistance breeding strategies in pearl millet.

KW - Downy mildew

KW - Pathotype 1

KW - Pearl millet

KW - Sclerospora graminicola

KW - Whole genome sequence

UR - http://www.scopus.com/inward/record.url?scp=85031741640&partnerID=8YFLogxK

U2 - 10.1016/j.btre.2017.07.006

DO - 10.1016/j.btre.2017.07.006

M3 - Article

C2 - 29062722

SN - 2215-017X

VL - 16

SP - 18

EP - 20

JO - Biotechnology Reports

JF - Biotechnology Reports

ER -

Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen: Genome sequence of pearl millet downy mildew pathogen

Abstract

Keywords

Access to Document

Permanent link

Other files and links

Fingerprint

Cite this