TY - GEN
T1 - Glioma Classification Using Multimodal Radiology and Histology Data
AU - Hamidinekoo, Azam
AU - Pieciak, Tomasz
AU - Afzali, Maryam
AU - Akanyeti, Otar
AU - Yuan, Yinyin
N1 - Funding Information:
Azam Hamidinekoo acknowledges the support by Children?s Cancer and Leukaemia Group (CCLGA201906). Tomasz Pieciak acknowledges the Polish National Agency for Academic Exchange for project PN/BEK/2019/1/00421 under the Bekker programme. Maryam Afzali was supported by a Wellcome Trust Investigator Award (096646/Z/11/Z). Otar Akanyeti acknowledges S?r Cymru Cofund II Research Fellowship grant. Yinyin Yuan acknowledges funding from Cancer Research UK Career Establishment Award (CRUK C45982/A21808), CRUK Early Detection Program Award (C9203/A28770), CRUK Sarcoma Accelerator (C56167/A29363), CRUK Brain Tumour Award (C25858/A28592), Rosetrees Trust (A2714), Children?s Cancer and Leukaemia Group (CCLGA201906), NIH U54 CA217376, NIH R01 CA185138, CDMRP BreastCancer Research Program Award BC132057, European Commission ITN (H2020-MSCA-ITN-2019), and The Royal Marsden/ICR National Institute of Health Research Biomedical Research Centre. This research was also supported in part by PLGrid Infrastructure. Tomasz Pieciak acknowledges Mr. Maciej Czuchry from CYFRONET Academic Computer Centre (Krak?w, Poland) for outstanding support.
Publisher Copyright:
© 2021, Springer Nature Switzerland AG.
Copyright:
Copyright 2021 Elsevier B.V., All rights reserved.
PY - 2021/3/26
Y1 - 2021/3/26
N2 - Gliomas are brain tumours with a high mortality rate. There are various grades and sub-types of this tumour, and the treatment procedure varies accordingly. Clinicians and oncologists diagnose and categorise these tumours based on visual inspection of radiology and histology data. However, this process can be time-consuming and subjective. The computer-assisted methods can help clinicians to make better and faster decisions. In this paper, we propose a pipeline for automatic classification of gliomas into three sub-types: oligodendroglioma, astrocytoma, and glioblastoma, using both radiology and histopathology images. The proposed approach implements distinct classification models for radiographic and histologic modalities and combines them through an ensemble method. The classification algorithm initially carries out tile-level (for histology) and slice-level (for radiology) classification via a deep learning method, then tile/slice-level latent features are combined for a whole-slide and whole-volume sub-type prediction. The classification algorithm was evaluated using the data set provided in the CPM-RadPath 2020 challenge. The proposed pipeline achieved the F1-Score of 0.886, Cohen’s Kappa score of 0.811 and Balance accuracy of 0.860. The ability of the proposed model for end-to-end learning of diverse features enables it to give a comparable prediction of glioma tumour sub-types.
AB - Gliomas are brain tumours with a high mortality rate. There are various grades and sub-types of this tumour, and the treatment procedure varies accordingly. Clinicians and oncologists diagnose and categorise these tumours based on visual inspection of radiology and histology data. However, this process can be time-consuming and subjective. The computer-assisted methods can help clinicians to make better and faster decisions. In this paper, we propose a pipeline for automatic classification of gliomas into three sub-types: oligodendroglioma, astrocytoma, and glioblastoma, using both radiology and histopathology images. The proposed approach implements distinct classification models for radiographic and histologic modalities and combines them through an ensemble method. The classification algorithm initially carries out tile-level (for histology) and slice-level (for radiology) classification via a deep learning method, then tile/slice-level latent features are combined for a whole-slide and whole-volume sub-type prediction. The classification algorithm was evaluated using the data set provided in the CPM-RadPath 2020 challenge. The proposed pipeline achieved the F1-Score of 0.886, Cohen’s Kappa score of 0.811 and Balance accuracy of 0.860. The ability of the proposed model for end-to-end learning of diverse features enables it to give a comparable prediction of glioma tumour sub-types.
KW - Digital pathology
KW - Glioma classification
KW - Multimodal MRI
UR - http://www.scopus.com/inward/record.url?scp=85107327265&partnerID=8YFLogxK
U2 - 10.1007/978-3-030-72087-2_45
DO - 10.1007/978-3-030-72087-2_45
M3 - Conference Proceeding (Non-Journal item)
AN - SCOPUS:85107327265
SN - 9783030720865
T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
SP - 508
EP - 518
BT - Brainlesion
A2 - Crimi, Alessandro
A2 - Bakas, Spyridon
PB - Springer Nature
T2 - 6th International MICCAI Brainlesion Workshop, BrainLes 2020 Held in Conjunction with 23rd Medical Image Computing for Computer Assisted Intervention Conference, MICCAI 2020
Y2 - 4 October 2020 through 4 October 2020
ER -