Matching two-dimensional gel electrophoresis' spots

António Dos Anjos; Bjarne Kjær Ersbøll; Faroq AL-Tam; Hamid Reza Shahbazkia

Matching two-dimensional gel electrophoresis' spots

António Dos Anjos^*, Bjarne Kjær Ersbøll, Faroq AL-Tam, Hamid Reza Shahbazkia

^*Corresponding author for this work

Department of Computer Science

Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (Non-Journal item)

Abstract

This paper describes an approach for matching Two-Dimensional Electrophoresis (2-DE) gels' spots, involving the use of image registration. The number of false positive matches produced by the proposed approach is small, when compared to academic and commercial state-of-the-art approaches. This article contributes to solving one of the greatest bottlenecks in the 2-DE analysis pipeline.

Original language	English
Title of host publication	BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms
Pages	111-117
Number of pages	7
Publication status	Published - 2012
Event	International Conference on Bioinformatics Models, Methods and Algorithms, BIOINFORMATICS 2012 - Vilamoura, Algarve, Portugal Duration: 01 Feb 2012 → 04 Feb 2012

Conference

Conference	International Conference on Bioinformatics Models, Methods and Algorithms, BIOINFORMATICS 2012
Country/Territory	Portugal
City	Vilamoura, Algarve
Period	01 Feb 2012 → 04 Feb 2012

Keywords

2-D electrophoresis
Matching
Registration

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@inproceedings{f58b08e6a8c1436386541b9e1098448d,

title = "Matching two-dimensional gel electrophoresis' spots",

abstract = "This paper describes an approach for matching Two-Dimensional Electrophoresis (2-DE) gels' spots, involving the use of image registration. The number of false positive matches produced by the proposed approach is small, when compared to academic and commercial state-of-the-art approaches. This article contributes to solving one of the greatest bottlenecks in the 2-DE analysis pipeline.",

keywords = "2-D electrophoresis, Matching, Registration",

author = "{Dos Anjos}, Ant{\'o}nio and Ersb{\o}ll, {Bjarne Kj{\ae}r} and Faroq AL-Tam and Shahbazkia, {Hamid Reza}",

year = "2012",

language = "English",

isbn = "9789898425904",

pages = "111--117",

booktitle = "BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms",

note = "International Conference on Bioinformatics Models, Methods and Algorithms, BIOINFORMATICS 2012 ; Conference date: 01-02-2012 Through 04-02-2012",

}

Dos Anjos, A, Ersbøll, BK, AL-Tam, F & Shahbazkia, HR 2012, Matching two-dimensional gel electrophoresis' spots. in BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms. pp. 111-117, International Conference on Bioinformatics Models, Methods and Algorithms, BIOINFORMATICS 2012, Vilamoura, Algarve, Portugal, 01 Feb 2012.

TY - GEN

T1 - Matching two-dimensional gel electrophoresis' spots

AU - Dos Anjos, António

AU - Ersbøll, Bjarne Kjær

AU - AL-Tam, Faroq

AU - Shahbazkia, Hamid Reza

PY - 2012

Y1 - 2012

N2 - This paper describes an approach for matching Two-Dimensional Electrophoresis (2-DE) gels' spots, involving the use of image registration. The number of false positive matches produced by the proposed approach is small, when compared to academic and commercial state-of-the-art approaches. This article contributes to solving one of the greatest bottlenecks in the 2-DE analysis pipeline.

AB - This paper describes an approach for matching Two-Dimensional Electrophoresis (2-DE) gels' spots, involving the use of image registration. The number of false positive matches produced by the proposed approach is small, when compared to academic and commercial state-of-the-art approaches. This article contributes to solving one of the greatest bottlenecks in the 2-DE analysis pipeline.

KW - 2-D electrophoresis

KW - Matching

KW - Registration

UR - http://www.scopus.com/inward/record.url?scp=84861977279&partnerID=8YFLogxK

M3 - Conference Proceeding (Non-Journal item)

AN - SCOPUS:84861977279

SN - 9789898425904

SP - 111

EP - 117

BT - BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms

T2 - International Conference on Bioinformatics Models, Methods and Algorithms, BIOINFORMATICS 2012

Y2 - 1 February 2012 through 4 February 2012

ER -

Matching two-dimensional gel electrophoresis' spots

Abstract

Conference

Keywords

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