TY - JOUR
T1 - The Planteome database
T2 - an integrated resource for reference ontologies, plant genomics and phenomics
AU - Cooper, Laurel
AU - Meier, Austin
AU - Laporte, Marie-Angélique
AU - Elser, Justin L.
AU - Mungall, Chris
AU - Sinn, Brandon T.
AU - Cabaliere, Dario
AU - Carbon, Seth
AU - Dunn, Nathan A.
AU - Smith, Barry
AU - Qu, Botong
AU - Preece, Justin
AU - Zhang, Eugene
AU - Todorovic, Sinisa
AU - Gkoutos, Georgios
AU - Doonan, John
AU - Stevenson, Dennis W.
AU - Arnaud, Elizabeth
AU - Jaiswal, Pankaj
PY - 2017/11/23
Y1 - 2017/11/23
N2 - The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides access to species-specific Crop Ontologies developed by various plant breeding and research communities from around the world. We provide integrated data on plant traits, phenotypes, and gene function and expression from 95 plant taxa, annotated with reference ontology terms. The Planteome project is developing a plant gene annotation platform; Planteome Noctua, to facilitate community engagement. All the Planteome ontologies are publicly available and are maintained at the Planteome GitHub site (https://github.com/Planteome) for sharing, tracking revisions and new requests. The annotated data are freely accessible from the ontology browser (http://browser.planteome.org/amigo) and our data repository
AB - The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides access to species-specific Crop Ontologies developed by various plant breeding and research communities from around the world. We provide integrated data on plant traits, phenotypes, and gene function and expression from 95 plant taxa, annotated with reference ontology terms. The Planteome project is developing a plant gene annotation platform; Planteome Noctua, to facilitate community engagement. All the Planteome ontologies are publicly available and are maintained at the Planteome GitHub site (https://github.com/Planteome) for sharing, tracking revisions and new requests. The annotated data are freely accessible from the ontology browser (http://browser.planteome.org/amigo) and our data repository
U2 - 10.1093/nar/gkx1152
DO - 10.1093/nar/gkx1152
M3 - Article
C2 - 29186578
SN - 0305-1048
JO - Nucleic Acids Research
JF - Nucleic Acids Research
M1 - gkx1152
ER -