Whole genome analysis of a schistosomiasis-transmitting freshwater snail

Coen M. Adema; Ladeana W. Hillier; Catherine S. Jones; Eric S. Loker; Matty Knight; Patrick Minx; Guilherme Oliveira; Nithya Raghavan; Andrew Shedlock; Laurence Rodrigues do Amaral; Halime D. Arican-Goktas; Juliana G. Assis; Elio Hideo Baba; Olga L. Baron; Christopher J. Bayne; Utibe Bickham-Wright; Kyle K. Biggar; Michael Blouin; Bryony C. Bonning; Chris Botka; Joanna M. Bridger; Katherine M. Buckley; Sarah K. Buddenborg; Roberta Lima Caldeira; Julia Carleton; Omar S. Carvalho; Maria G. Castillo; Iain W. Chalmers; Mikkel Christensens; Sandra Clifton; Celine Cosseau; Christine Coustau; Richard M. Cripps; Yesid Cuesta-Astroz; Scott F. Cummins; Leon Di Stephano; Nathalie Dinguirard; David Duval; Scott Emrich; Cédric Feschotte; Rene Feyereisen; Peter Fitzgerald; Catrina Fronick; Lucinda Fulton; Richard Galinier; Sandra G. Gava; Michael Geusz; Kathrin K. Geyer; Gloria I. Giraldo-Calderón; Matheus de Souza Gomes; Michelle A. Gordy; Benjamin Gourbal; Christoph Grunau; Patrick C. Hanington; Karl F. Hoffmann; Daniel Hughes; Judith Humphries; Daniel J. Jackson; Liana K. Jannotti-Passos; Wander De Jesus Jeremias; Susan Jobling; Bishoy Kamel; Aurélie Kapusta; Satwant Kaur; Joris M. Koene; Andrea B. Kohn; Dan Lawson; Scott P Lawton; Di Liang; Yanin Limpanont; Sijun Liu; Anne E. Lockyer; Tyanna L. Lovato; Fernanda Ludolf; Vince Magrini; Donald P. Mcmanus; Monica Medina; Milind Misra; Guillaume Mitta; Gerald M. Mkoji; Michael J. Montague; Cesar Montelongo; Leonid L. Moroz; Monica C. Munoz-Torres; Umar Niazi; Leslie R. Noble; Francislon S. Oliveira; Fabiano S. Pais; Anthony T. Papenfuss; Rob Peace; Janeth J. Pena; Emmanuel A. Pila; Titouan Quelais; Brian J. Raney; Jonathan P. Rast; David Rollinson; Izinara C. Rosse; Bronwyn Rotgans; Edwin J. Routledge; Kathryn M. Ryan; Larissa L. S. Scholte; Kenneth B. Storey; Martin Swain; Jacob A. Tennessen; Chad Tomlinson; Damian L. Trujillo; Emanuela V. Volpi; Anthony J. Walker; Tianfang Wang; Ittiprasert Wannaporn; Wesley C. Warren; Xiao-Jun Wu; Timothy P. Yoshino; Mohammed Yusuf; Si-Ming Zhang; Min Zhao; Richard K. Wilson

doi:10.1038/ncomms15451

Whole genome analysis of a schistosomiasis-transmitting freshwater snail

Coen M. Adema, Ladeana W. Hillier, Catherine S. Jones, Eric S. Loker, Matty Knight, Patrick Minx, Guilherme Oliveira, Nithya Raghavan, Andrew Shedlock, Laurence Rodrigues do Amaral, Halime D. Arican-Goktas, Juliana G. Assis, Elio Hideo Baba, Olga L. Baron, Christopher J. Bayne, Utibe Bickham-Wright, Kyle K. Biggar, Michael Blouin, Bryony C. Bonning, Chris BotkaJoanna M. Bridger, Katherine M. Buckley, Sarah K. Buddenborg, Roberta Lima Caldeira, Julia Carleton, Omar S. Carvalho, Maria G. Castillo, Iain W. Chalmers, Mikkel Christensens, Sandra Clifton, Celine Cosseau, Christine Coustau, Richard M. Cripps, Yesid Cuesta-Astroz, Scott F. Cummins, Leon Di Stephano, Nathalie Dinguirard, David Duval, Scott Emrich, Cédric Feschotte, Rene Feyereisen, Peter Fitzgerald, Catrina Fronick, Lucinda Fulton, Richard Galinier, Sandra G. Gava, Michael Geusz, Kathrin K. Geyer, Gloria I. Giraldo-Calderón, Matheus de Souza Gomes, Michelle A. Gordy, Benjamin Gourbal, Christoph Grunau, Patrick C. Hanington, Karl F. Hoffmann, Daniel Hughes, Judith Humphries, Daniel J. Jackson, Liana K. Jannotti-Passos, Wander De Jesus Jeremias, Susan Jobling, Bishoy Kamel, Aurélie Kapusta, Satwant Kaur, Joris M. Koene, Andrea B. Kohn, Dan Lawson, Scott P Lawton, Di Liang, Yanin Limpanont, Sijun Liu, Anne E. Lockyer, Tyanna L. Lovato, Fernanda Ludolf, Vince Magrini, Donald P. Mcmanus, Monica Medina, Milind Misra, Guillaume Mitta, Gerald M. Mkoji, Michael J. Montague, Cesar Montelongo, Leonid L. Moroz, Monica C. Munoz-Torres, Umar Niazi, Leslie R. Noble, Francislon S. Oliveira, Fabiano S. Pais, Anthony T. Papenfuss, Rob Peace, Janeth J. Pena, Emmanuel A. Pila, Titouan Quelais, Brian J. Raney, Jonathan P. Rast, David Rollinson, Izinara C. Rosse, Bronwyn Rotgans, Edwin J. Routledge, Kathryn M. Ryan, Larissa L. S. Scholte, Kenneth B. Storey, Martin Swain, Jacob A. Tennessen, Chad Tomlinson, Damian L. Trujillo, Emanuela V. Volpi, Anthony J. Walker, Tianfang Wang, Ittiprasert Wannaporn, Wesley C. Warren, Xiao-Jun Wu, Timothy P. Yoshino, Mohammed Yusuf, Si-Ming Zhang, Min Zhao, Richard K. Wilson

Department of Life Sciences

Research output: Contribution to journal › Article › peer-review

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Abstract

Biomphalaria snails are instrumental in transmission of the human blood fluke Schistosoma mansoni. With the World Health Organization's goal to eliminate schistosomiasis as a global health problem by 2025, there is now renewed emphasis on snail control. Here, we characterize the genome of Biomphalaria glabrata, a lophotrochozoan protostome, and provide timely and important information on snail biology. We describe aspects of phero-perception, stress responses, immune function and regulation of gene expression that support the persistence of B. glabrata in the field and may define this species as a suitable snail host for S. mansoni. We identify several potential targets for developing novel control measures aimed at reducing snail-mediated transmission of schistosomiasis.

Original language	English
Article number	15451
Pages (from-to)	15451
Journal	Nature Communications
Volume	8
DOIs	https://doi.org/10.1038/ncomms15451
Publication status	Published - 16 May 2017

Keywords

DNA sequencing
Genome
Genome informatics
Zoology
Schistosoma mansoni
Gene Expression Regulation
Stress, Physiological
Biomphalaria/genetics
Proteome
Pheromones
Sequence Analysis, DNA
DNA Transposable Elements
Animals
Fresh Water
Schistosomiasis mansoni/transmission
Host-Parasite Interactions
Animal Communication
Evolution, Molecular

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.1038/ncomms15451Licence: CC BY

Whole genome analysis of an schistomiasis-trasmitting freshwater snailFinal published version, 1.51 MBLicence: CC BY

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Adema, C. M., Hillier, L. W., Jones, C. S., Loker, E. S., Knight, M., Minx, P., Oliveira, G., Raghavan, N., Shedlock, A., do Amaral, L. R., Arican-Goktas, H. D., Assis, J. G., Baba, E. H., Baron, O. L., Bayne, C. J., Bickham-Wright, U., Biggar, K. K., Blouin, M., Bonning, B. C., ... Wilson, R. K. (2017). Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nature Communications, 8, 15451. Article 15451. https://doi.org/10.1038/ncomms15451

@article{2174ff86a55548c8acd86ea19138bf39,

title = "Whole genome analysis of a schistosomiasis-transmitting freshwater snail",

abstract = "Biomphalaria snails are instrumental in transmission of the human blood fluke Schistosoma mansoni. With the World Health Organization's goal to eliminate schistosomiasis as a global health problem by 2025, there is now renewed emphasis on snail control. Here, we characterize the genome of Biomphalaria glabrata, a lophotrochozoan protostome, and provide timely and important information on snail biology. We describe aspects of phero-perception, stress responses, immune function and regulation of gene expression that support the persistence of B. glabrata in the field and may define this species as a suitable snail host for S. mansoni. We identify several potential targets for developing novel control measures aimed at reducing snail-mediated transmission of schistosomiasis.",

keywords = "DNA sequencing, Genome, Genome informatics, Zoology, Schistosoma mansoni, Gene Expression Regulation, Stress, Physiological, Biomphalaria/genetics, Proteome, Pheromones, Sequence Analysis, DNA, DNA Transposable Elements, Animals, Fresh Water, Schistosomiasis mansoni/transmission, Host-Parasite Interactions, Animal Communication, Evolution, Molecular",

author = "Adema, {Coen M.} and Hillier, {Ladeana W.} and Jones, {Catherine S.} and Loker, {Eric S.} and Matty Knight and Patrick Minx and Guilherme Oliveira and Nithya Raghavan and Andrew Shedlock and {do Amaral}, {Laurence Rodrigues} and Arican-Goktas, {Halime D.} and Assis, {Juliana G.} and Baba, {Elio Hideo} and Baron, {Olga L.} and Bayne, {Christopher J.} and Utibe Bickham-Wright and Biggar, {Kyle K.} and Michael Blouin and Bonning, {Bryony C.} and Chris Botka and Bridger, {Joanna M.} and Buckley, {Katherine M.} and Buddenborg, {Sarah K.} and {Lima Caldeira}, Roberta and Julia Carleton and Carvalho, {Omar S.} and Castillo, {Maria G.} and Chalmers, {Iain W.} and Mikkel Christensens and Sandra Clifton and Celine Cosseau and Christine Coustau and Cripps, {Richard M.} and Yesid Cuesta-Astroz and Cummins, {Scott F.} and {Di Stephano}, Leon and Nathalie Dinguirard and David Duval and Scott Emrich and C{\'e}dric Feschotte and Rene Feyereisen and Peter Fitzgerald and Catrina Fronick and Lucinda Fulton and Richard Galinier and Gava, {Sandra G.} and Michael Geusz and Geyer, {Kathrin K.} and Giraldo-Calder{\'o}n, {Gloria I.} and {de Souza Gomes}, Matheus and Gordy, {Michelle A.} and Benjamin Gourbal and Christoph Grunau and Hanington, {Patrick C.} and Hoffmann, {Karl F.} and Daniel Hughes and Judith Humphries and Jackson, {Daniel J.} and Jannotti-Passos, {Liana K.} and {De Jesus Jeremias}, Wander and Susan Jobling and Bishoy Kamel and Aur{\'e}lie Kapusta and Satwant Kaur and Koene, {Joris M.} and Kohn, {Andrea B.} and Dan Lawson and Lawton, {Scott P} and Di Liang and Yanin Limpanont and Sijun Liu and Lockyer, {Anne E.} and Lovato, {Tyanna L.} and Fernanda Ludolf and Vince Magrini and Mcmanus, {Donald P.} and Monica Medina and Milind Misra and Guillaume Mitta and Mkoji, {Gerald M.} and Montague, {Michael J.} and Cesar Montelongo and Moroz, {Leonid L.} and Munoz-Torres, {Monica C.} and Umar Niazi and Noble, {Leslie R.} and Oliveira, {Francislon S.} and Pais, {Fabiano S.} and Papenfuss, {Anthony T.} and Rob Peace and Pena, {Janeth J.} and Pila, {Emmanuel A.} and Titouan Quelais and Raney, {Brian J.} and Rast, {Jonathan P.} and David Rollinson and Rosse, {Izinara C.} and Bronwyn Rotgans and Routledge, {Edwin J.} and Ryan, {Kathryn M.} and Scholte, {Larissa L. S.} and Storey, {Kenneth B.} and Martin Swain and Tennessen, {Jacob A.} and Chad Tomlinson and Trujillo, {Damian L.} and Volpi, {Emanuela V.} and Walker, {Anthony J.} and Tianfang Wang and Ittiprasert Wannaporn and Warren, {Wesley C.} and Xiao-Jun Wu and Yoshino, {Timothy P.} and Mohammed Yusuf and Si-Ming Zhang and Min Zhao and Wilson, {Richard K.}",

note = "Publisher Copyright: {\textcopyright} 2017 The Author(s).",

year = "2017",

month = may,

day = "16",

doi = "10.1038/ncomms15451",

language = "English",

volume = "8",

pages = "15451",

journal = "Nature Communications",

issn = "2041-1723",

publisher = "Springer Nature",

}

Adema, CM, Hillier, LW, Jones, CS, Loker, ES, Knight, M, Minx, P, Oliveira, G, Raghavan, N, Shedlock, A, do Amaral, LR, Arican-Goktas, HD, Assis, JG, Baba, EH, Baron, OL, Bayne, CJ, Bickham-Wright, U, Biggar, KK, Blouin, M, Bonning, BC, Botka, C, Bridger, JM, Buckley, KM, Buddenborg, SK, Lima Caldeira, R, Carleton, J, Carvalho, OS, Castillo, MG, Chalmers, IW, Christensens, M, Clifton, S, Cosseau, C, Coustau, C, Cripps, RM, Cuesta-Astroz, Y, Cummins, SF, Di Stephano, L, Dinguirard, N, Duval, D, Emrich, S, Feschotte, C, Feyereisen, R, Fitzgerald, P, Fronick, C, Fulton, L, Galinier, R, Gava, SG, Geusz, M, Geyer, KK, Giraldo-Calderón, GI, de Souza Gomes, M, Gordy, MA, Gourbal, B, Grunau, C, Hanington, PC, Hoffmann, KF, Hughes, D, Humphries, J, Jackson, DJ, Jannotti-Passos, LK, De Jesus Jeremias, W, Jobling, S, Kamel, B, Kapusta, A, Kaur, S, Koene, JM, Kohn, AB, Lawson, D, Lawton, SP, Liang, D, Limpanont, Y, Liu, S, Lockyer, AE, Lovato, TL, Ludolf, F, Magrini, V, Mcmanus, DP, Medina, M, Misra, M, Mitta, G, Mkoji, GM, Montague, MJ, Montelongo, C, Moroz, LL, Munoz-Torres, MC, Niazi, U, Noble, LR, Oliveira, FS, Pais, FS, Papenfuss, AT, Peace, R, Pena, JJ, Pila, EA, Quelais, T, Raney, BJ, Rast, JP, Rollinson, D, Rosse, IC, Rotgans, B, Routledge, EJ, Ryan, KM, Scholte, LLS, Storey, KB, Swain, M, Tennessen, JA, Tomlinson, C, Trujillo, DL, Volpi, EV, Walker, AJ, Wang, T, Wannaporn, I, Warren, WC, Wu, X-J, Yoshino, TP, Yusuf, M, Zhang, S-M, Zhao, M & Wilson, RK 2017, 'Whole genome analysis of a schistosomiasis-transmitting freshwater snail', Nature Communications, vol. 8, 15451, pp. 15451. https://doi.org/10.1038/ncomms15451

TY - JOUR

T1 - Whole genome analysis of a schistosomiasis-transmitting freshwater snail

AU - Adema, Coen M.

AU - Hillier, Ladeana W.

AU - Jones, Catherine S.

AU - Loker, Eric S.

AU - Knight, Matty

AU - Minx, Patrick

AU - Oliveira, Guilherme

AU - Raghavan, Nithya

AU - Shedlock, Andrew

AU - do Amaral, Laurence Rodrigues

AU - Arican-Goktas, Halime D.

AU - Assis, Juliana G.

AU - Baba, Elio Hideo

AU - Baron, Olga L.

AU - Bayne, Christopher J.

AU - Bickham-Wright, Utibe

AU - Biggar, Kyle K.

AU - Blouin, Michael

AU - Bonning, Bryony C.

AU - Botka, Chris

AU - Bridger, Joanna M.

AU - Buckley, Katherine M.

AU - Buddenborg, Sarah K.

AU - Lima Caldeira, Roberta

AU - Carleton, Julia

AU - Carvalho, Omar S.

AU - Castillo, Maria G.

AU - Chalmers, Iain W.

AU - Christensens, Mikkel

AU - Clifton, Sandra

AU - Cosseau, Celine

AU - Coustau, Christine

AU - Cripps, Richard M.

AU - Cuesta-Astroz, Yesid

AU - Cummins, Scott F.

AU - Di Stephano, Leon

AU - Dinguirard, Nathalie

AU - Duval, David

AU - Emrich, Scott

AU - Feschotte, Cédric

AU - Feyereisen, Rene

AU - Fitzgerald, Peter

AU - Fronick, Catrina

AU - Fulton, Lucinda

AU - Galinier, Richard

AU - Gava, Sandra G.

AU - Geusz, Michael

AU - Geyer, Kathrin K.

AU - Giraldo-Calderón, Gloria I.

AU - de Souza Gomes, Matheus

AU - Gordy, Michelle A.

AU - Gourbal, Benjamin

AU - Grunau, Christoph

AU - Hanington, Patrick C.

AU - Hoffmann, Karl F.

AU - Hughes, Daniel

AU - Humphries, Judith

AU - Jackson, Daniel J.

AU - Jannotti-Passos, Liana K.

AU - De Jesus Jeremias, Wander

AU - Jobling, Susan

AU - Kamel, Bishoy

AU - Kapusta, Aurélie

AU - Kaur, Satwant

AU - Koene, Joris M.

AU - Kohn, Andrea B.

AU - Lawson, Dan

AU - Lawton, Scott P

AU - Liang, Di

AU - Limpanont, Yanin

AU - Liu, Sijun

AU - Lockyer, Anne E.

AU - Lovato, Tyanna L.

AU - Ludolf, Fernanda

AU - Magrini, Vince

AU - Mcmanus, Donald P.

AU - Medina, Monica

AU - Misra, Milind

AU - Mitta, Guillaume

AU - Mkoji, Gerald M.

AU - Montague, Michael J.

AU - Montelongo, Cesar

AU - Moroz, Leonid L.

AU - Munoz-Torres, Monica C.

AU - Niazi, Umar

AU - Noble, Leslie R.

AU - Oliveira, Francislon S.

AU - Pais, Fabiano S.

AU - Papenfuss, Anthony T.

AU - Peace, Rob

AU - Pena, Janeth J.

AU - Pila, Emmanuel A.

AU - Quelais, Titouan

AU - Raney, Brian J.

AU - Rast, Jonathan P.

AU - Rollinson, David

AU - Rosse, Izinara C.

AU - Rotgans, Bronwyn

AU - Routledge, Edwin J.

AU - Ryan, Kathryn M.

AU - Scholte, Larissa L. S.

AU - Storey, Kenneth B.

AU - Swain, Martin

AU - Tennessen, Jacob A.

AU - Tomlinson, Chad

AU - Trujillo, Damian L.

AU - Volpi, Emanuela V.

AU - Walker, Anthony J.

AU - Wang, Tianfang

AU - Wannaporn, Ittiprasert

AU - Warren, Wesley C.

AU - Wu, Xiao-Jun

AU - Yoshino, Timothy P.

AU - Yusuf, Mohammed

AU - Zhang, Si-Ming

AU - Zhao, Min

AU - Wilson, Richard K.

PY - 2017/5/16

Y1 - 2017/5/16

N2 - Biomphalaria snails are instrumental in transmission of the human blood fluke Schistosoma mansoni. With the World Health Organization's goal to eliminate schistosomiasis as a global health problem by 2025, there is now renewed emphasis on snail control. Here, we characterize the genome of Biomphalaria glabrata, a lophotrochozoan protostome, and provide timely and important information on snail biology. We describe aspects of phero-perception, stress responses, immune function and regulation of gene expression that support the persistence of B. glabrata in the field and may define this species as a suitable snail host for S. mansoni. We identify several potential targets for developing novel control measures aimed at reducing snail-mediated transmission of schistosomiasis.

AB - Biomphalaria snails are instrumental in transmission of the human blood fluke Schistosoma mansoni. With the World Health Organization's goal to eliminate schistosomiasis as a global health problem by 2025, there is now renewed emphasis on snail control. Here, we characterize the genome of Biomphalaria glabrata, a lophotrochozoan protostome, and provide timely and important information on snail biology. We describe aspects of phero-perception, stress responses, immune function and regulation of gene expression that support the persistence of B. glabrata in the field and may define this species as a suitable snail host for S. mansoni. We identify several potential targets for developing novel control measures aimed at reducing snail-mediated transmission of schistosomiasis.

KW - DNA sequencing

KW - Genome

KW - Genome informatics

KW - Zoology

KW - Schistosoma mansoni

KW - Gene Expression Regulation

KW - Stress, Physiological

KW - Biomphalaria/genetics

KW - Proteome

KW - Pheromones

KW - Sequence Analysis, DNA

KW - DNA Transposable Elements

KW - Animals

KW - Fresh Water

KW - Schistosomiasis mansoni/transmission

KW - Host-Parasite Interactions

KW - Animal Communication

KW - Evolution, Molecular

UR - http://www.scopus.com/inward/record.url?scp=85019481831&partnerID=8YFLogxK

U2 - 10.1038/ncomms15451

DO - 10.1038/ncomms15451

M3 - Article

C2 - 28508897

SN - 2041-1723

VL - 8

SP - 15451

JO - Nature Communications

JF - Nature Communications

M1 - 15451

ER -

Whole genome analysis of a schistosomiasis-transmitting freshwater snail

Abstract

Keywords

UN SDGs

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Karl Hoffmann

Martin Swain

Flatworm DNA methylation: deciphering the mark and characterising the machinery

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Whole genome analysis of a schistosomiasis-transmitting freshwater snail

Abstract

Keywords

UN SDGs

Access to Document

Permanent link

Other files and links

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Karl Hoffmann

Martin Swain

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Flatworm DNA methylation: deciphering the mark and characterising the machinery

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